- Transcript HORVU4Hr1G057650.1
- Transcript IDHORVU4Hr1G057650.1
- Gene IDHORVU4Hr1G057650
Barley RTD
Exon Structure of HORVU4Hr1G057650.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 483706465 | 483705886 | + |
| chr4H | 2 | 483706600 | 483706543 | + |
| chr4H | 3 | 483706780 | 483706679 | + |
| chr4H | 4 | 483707382 | 483707226 | + |
| chr4H | 5 | 483711644 | 483711561 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g27320.3 | +3 | 9e-61 | 197 | 132/160 (83%) | protein|steroid binding protein, putative, expressed |
| TAIR PP10 | AT5G58220 @ ARAPORT AT5G58220.3 @ TAIR |
+3 | 3e-37 | 135 | 89/177 (50%) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=311 |
| BRACH PP3 | Bradi1g60700.3.p | +3 | 4e-68 | 216 | 142/169 (84%) | pacid=32804009 transcript=Bradi1g60700.3 locus=Bradi1g60700 ID=Bradi1g60700.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (981 bp)
>HORVU4Hr1G057650.1 981 150831_barley_pseudomolecules AGTATTTAGATCGGTAAATTCACCTTCGTCTTACCCTTCCGGCAAAAACAGGTGTTGCTC TCGTAGCGCTCGCTCTCACCCACCCTTCCCCAACTCGCATCCAGCGCCGCAACCCCTCGT CTCTCCCCCCCTTCCGATCTGAGGCGTCGTTGGAGATCGGCGGCAACCGAAGAGGCGTCC GACGACGGCCGTCGCGGGTGGCACCAGTGCAGTGGAGCAAATCAACCAGTTGAGATGGCG ACATTGAGGCCGCTGAGCGTGGAGGAGGTGCTGAGGGTGAACGGCAGCCACCGCTTTGCC GCCGCGCTGGCTGCCGCCTCCCCCTTTGATTCTCTTGCCAACGCGCTCCTTGCCGCCCGC CGCATCTGGCTGAACGAGGTAGGTAGCTCTCGATCTCCTAATCTCTCTTCCCTGCACCCA TCCTCCTGTCTGAAGACCCCTCACTTCCCATACTGATACATGCCGCCCACGTGCGTGCAA TCGGGATCGACGTGGAACAAATCAAGGTGGACGTGACTGGATGGCTGGAGGCCTTCGCTG CCCACCCACCCATCGGAAGCACCTCCTCCTCCGTCTCCAAGTGGAGCAAGGAAGAGCAAT CAGCTGCTCTTTCCACAGCCACTGATTCGACTGCGCAGGAGTTGTCCGAGTGGAATGCCA AATACAGGGAGAAGTTTGGGTTCGTGTTCATGATATGCGCATCTGGGAGGACTGCCCCTG AGGTCTTAGCTGAGCTTAAGAGGCGTTATGCAAATAGACCAGTTGTTGAGCTTGAGGCTG CGGCAGAGGAAGAACTGAAGATAACTGAGCTGCGTCTTGCAAAGCTTTTCGCATCAGAAA CTGCTGCTCCCCCTACTTCAGGTGAAAATCAGATTAGCCAACCGGATAAAGCAGCAGGCA ACTCCAACCGGACACGCCCTCCTATCACAACCCATGTGCTGGACACGGCTCTTGGATCGC CAGCATCTGGAATTGAAGTTC