- Transcript HORVU4Hr1G057310.2
- Transcript IDHORVU4Hr1G057310.2
- Gene IDHORVU4Hr1G057310
Barley RTD
Exon Structure of HORVU4Hr1G057310.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 481895387 | 481893946 | + |
| chr4H | 2 | 481896080 | 481895677 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g17610.1 | +3 | 0.0 | 709 | 386/446 (87%) | protein|OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed |
| TAIR PP10 | AT5G02820 @ ARAPORT AT5G02820.1 @ TAIR |
+3 | 0.0 | 578 | 275/363 (76%) | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI, subunit A protein | chr5:642658-644123 FORWARD LENGTH=427 |
| BRACH PP3 | Bradi1g65870.1.p | +3 | 0.0 | 729 | 411/442 (93%) | pacid=32803449 transcript=Bradi1g65870.1 locus=Bradi1g65870 ID=Bradi1g65870.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1846 bp)
>HORVU4Hr1G057310.2 1846 150831_barley_pseudomolecules ACCAAAGCCACAGCCACACTCGAGTTCGTATCCTGCCGCCGTCTCCGCCCGTCCGCCGTA GCGTCCCCCCCGGTGAGCCCGCCTCCGGATCTCTGCAAATGTCGGAGAGGAAGCGCCGGG CGGGGACAGATGCGGCCGAGGGGGGCTCCACCTCGAAGAAACTGCGCGGCGCCTCGGCCG CCGCATCCTACGCCCAATCCCTCCGCTCGAAGCTCCGCCCTGACGCCTCCATCCTCGCCT CCCTCCGCGCCCTCGCCTCCGCCGCCTCCAAATCCAAGCCCGCGACCGCCTCCTCAGCCG GAGCGAAAGCCCTCTCCGAGGACGACCCGGCCTCCGCCTCCTCCAACTACATCGTGGTCG CCGACCAGGACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCGCGC GAAGCATCCTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCACCTCCTCAAACC AGGTATACCTCCCGGACCTCGACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGCCCT TCGCCAACGTCGCCACCGCGCGCAAGGCCACCGTCACCGCGCGCGTCCTCTCCCTCGTCC ACGCCGTCCTGCGCAGGGGCATCCATGTCACCAAGAGGGATCTCTTCTACACCGACGTGA AGCTCTTCGGCGACCAGTCCCAGTCGGACGCCATCCTCGACGACGTCTCCTGCATGCTTG GATGCACCCGCTCGTCCCTACATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCCGCC TCACTTTTGCTGATGACGGCGACGTCATCGACTGCACGCGAATGGGCGTCGGCGGGAAGG CCATCCCGCCCAACATTGACAGGGTGTCAGGCATTGAGAGCGACGCTCTCTTCATCTTGC TTGTGGAGAAAGATGCTGCTTTCATGCGCCTCGCCGAGGACAGGTTCTACAACCGTTTTC CGTGCATCATATTGACAGCAAAGGGGCAGCCGGATGTTGCCACCAGGTTGTTCTTGCGCC GGCTTAAAGTGGAGCTGAAGCTTCCGGTGCTCGCATTGGTGGACTCTGATCCATATGGGC TGAAGATCTTGTCCGTGTATATGTGTGGCTCGAAGAACATGTCGTATGACAGTGCCAATC TGACAACGCCGGATATCAAGTGGCTCGGCGTGCGGCCAAGTGATCTGGACAAGTACAGGG TACCGGAGCAGTGCCGGCTTCCCATGAGTGATCACGATATCAAGGTGGGAAAAGAGATGC TAGAGGAAGACTTCGTGAAGCAAAATGAAGGGTGGGTGAAGGAGTTGGAGACGATGTTGC GAACAAAACAGAAGGCTGAGATTCAGGCTCTCAGCTCGTTTGGGTTCCAGTACCTGACTG AGGTATATCTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTAAGATCTCTTCTGATGAC AGCAGCTGCAGATGATACAGAGAAAGAGCAGCTTGATCGAGGAGCATCAATTTGACACTA GTGGGGAGCTAGCTTAACAATACCTCATCTGTACCGTGTAACATCTGTGCGGCAATCCCT TTGTATGTTTTATGTATTTGAAAAACCGTATGTTGTGTACTTGTGAGACCTGTATTTGGA AGTATCTGCATCTGTGGAATTAGATGTGACTTTTGTGTATTTGAAAATTCATATATTGTG TTTTTCTTGTACTTCTGGAGATGGAATTTGGTGTAACTTTCTGATGCCTGTATTTTGAAG CTAGCATTCGCATATGGAAAACCGGTTGTACTCTGTGCGTCTTGAATTACTTGTTGCTCA GATGGATGTATCTAGATGTAATTCCAGGTGGAGGAAGAGATTAGAG