Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u29730	81.9	+	+	2139	-475	Containing

Transcripts from Gene HORVU4Hr1G057310

Transcript	Length(bp)	Description
HORVU4Hr1G057310.1	1531	gene=HORVU4Hr1G057310 CDS=1-1428
HORVU4Hr1G057310.2	1846	gene=HORVU4Hr1G057310 CDS=3-1424
HORVU4Hr1G057310.3	1843	gene=HORVU4Hr1G057310 CDS=3-1424

Exon Structure of HORVU4Hr1G057310

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g17610.1	+3	0.0	709	386/446 (87%)	protein|OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed
TAIR PP10	AT5G02820 @ ARAPORT AT5G02820.1 @ TAIR	+3	0.0	578	275/363 (76%)	Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI, subunit A protein | chr5:642658-644123 FORWARD LENGTH=427
BRACH PP3	Bradi1g65870.1.p	+3	0.0	729	411/442 (93%)	pacid=32803449 transcript=Bradi1g65870.1 locus=Bradi1g65870 ID=Bradi1g65870.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons