Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G052720.22

ChromosomeExonStartStopDirection
chr4H1437923835437923736+
chr4H2437924043437923928+
chr4H3437924264437924178+
chr4H4437924432437924344+
chr4H5437924733437924685+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g19970.1 +1 3e-92 278 135/168 (80%) protein|CAS1 domain-containing protein 1 precursor, putative, expressed
TAIR PP10 AT1G29890 @ ARAPORT
AT1G29890.1 @ TAIR		 +1 3e-82 249 117/168 (70%) Symbols: | O-acetyltransferase family protein | chr1:10464491-10467153 FORWARD LENGTH=470
BRACH PP3 Bradi1g64180.3.p +1 8e-96 285 140/168 (83%) pacid=32801053 transcript=Bradi1g64180.3 locus=Bradi1g64180 ID=Bradi1g64180.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (441 bp)

>HORVU4Hr1G052720.22 441 150831_barley_pseudomolecules
ATTGCTATAAAATTTGTTGGGTGCTTCTTGGTAGTTATCTTGGTATGGGAAATCCCAGGT
GTCTTTGAGATAGTCTGGAGCCCATTCACTTTTCTTCTAGGTTATGATGATCCTTCTAAA
CCAGATCTCCCTAGGTTGCATGAGTGGCACTTCCGATCTGGACTGGATCGCTACATATGG
ATTGTGGGGATGATATATGCCTATTACCATCCAACAGTTGAGAAGTGGATGGAAAAGCTT
GAAGAAGCTGAAACAAGAACGAAGCTCTATATTAAGGCCTCTATAGTTACAGTTTCTATA
ACGGCTGGGTATTTGTGGTACGAGTACATCTACAAGATGGACAAGATTACCTACAATAAA
TACCATCCTTACACATCCTGGATCCCCATAACCTGGCTTGGAAAGATTACACTAGAAACA
TATATATCTCAGTTCCATATC