Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u2939292.5++5427-443Containing




Transcripts from Gene HORVU4Hr1G052720

TranscriptLength(bp)Description
HORVU4Hr1G052720.11764gene=HORVU4Hr1G052720 CDS=252-1694
HORVU4Hr1G052720.22025gene=HORVU4Hr1G052720 CDS=214-1545
HORVU4Hr1G052720.31953gene=HORVU4Hr1G052720 CDS=576-1598
HORVU4Hr1G052720.41780gene=HORVU4Hr1G052720 CDS=154-1494
HORVU4Hr1G052720.51715gene=HORVU4Hr1G052720 CDS=145-1590
HORVU4Hr1G052720.61900gene=HORVU4Hr1G052720 CDS=542-1564
HORVU4Hr1G052720.72064gene=HORVU4Hr1G052720 CDS=531-1880
HORVU4Hr1G052720.81731gene=HORVU4Hr1G052720 CDS=133-1461
HORVU4Hr1G052720.91770gene=HORVU4Hr1G052720 CDS=943-1770
HORVU4Hr1G052720.101805gene=HORVU4Hr1G052720 CDS=133-1473
HORVU4Hr1G052720.111808gene=HORVU4Hr1G052720 CDS=133-1476
HORVU4Hr1G052720.121802gene=HORVU4Hr1G052720 CDS=946-1800
HORVU4Hr1G052720.132182gene=HORVU4Hr1G052720 CDS=531-1880
HORVU4Hr1G052720.142052gene=HORVU4Hr1G052720 CDS=3-1784
HORVU4Hr1G052720.152055gene=HORVU4Hr1G052720 CDS=3-1787
HORVU4Hr1G052720.161653gene=HORVU4Hr1G052720 CDS=2-1624
HORVU4Hr1G052720.171528gene=HORVU4Hr1G052720 CDS=3-1526
HORVU4Hr1G052720.181658gene=HORVU4Hr1G052720 CDS=189-1658
HORVU4Hr1G052720.191658gene=HORVU4Hr1G052720 CDS=189-1658
HORVU4Hr1G052720.201302gene=HORVU4Hr1G052720 CDS=226-1302
HORVU4Hr1G052720.211322gene=HORVU4Hr1G052720 CDS=1-1074
HORVU4Hr1G052720.22441gene=HORVU4Hr1G052720 CDS=1-441



Exon Structure of HORVU4Hr1G052720


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g19970.1 +3 0.0 861 418/455 (92%) protein|CAS1 domain-containing protein 1 precursor, putative, expressed
TAIR PP10 AT5G46340 @ ARAPORT
AT5G46340.1 @ TAIR
+3 0.0 726 349/451 (77%) Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540
BRACH PP3 Bradi1g64180.2.p +3 0.0 891 435/454 (96%) pacid=32801052 transcript=Bradi1g64180.2 locus=Bradi1g64180 ID=Bradi1g64180.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons