- Gene HORVU4Hr1G052720
- Gene IDHORVU4Hr1G052720
- Location chr4H: 437920064 - 437925490
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u29392 | 92.5 | + | + | 5427 | -443 | Containing |
Transcripts from Gene HORVU4Hr1G052720
Transcript | Length(bp) | Description |
---|---|---|
HORVU4Hr1G052720.1 | 1764 | gene=HORVU4Hr1G052720 CDS=252-1694 |
HORVU4Hr1G052720.2 | 2025 | gene=HORVU4Hr1G052720 CDS=214-1545 |
HORVU4Hr1G052720.3 | 1953 | gene=HORVU4Hr1G052720 CDS=576-1598 |
HORVU4Hr1G052720.4 | 1780 | gene=HORVU4Hr1G052720 CDS=154-1494 |
HORVU4Hr1G052720.5 | 1715 | gene=HORVU4Hr1G052720 CDS=145-1590 |
HORVU4Hr1G052720.6 | 1900 | gene=HORVU4Hr1G052720 CDS=542-1564 |
HORVU4Hr1G052720.7 | 2064 | gene=HORVU4Hr1G052720 CDS=531-1880 |
HORVU4Hr1G052720.8 | 1731 | gene=HORVU4Hr1G052720 CDS=133-1461 |
HORVU4Hr1G052720.9 | 1770 | gene=HORVU4Hr1G052720 CDS=943-1770 |
HORVU4Hr1G052720.10 | 1805 | gene=HORVU4Hr1G052720 CDS=133-1473 |
HORVU4Hr1G052720.11 | 1808 | gene=HORVU4Hr1G052720 CDS=133-1476 |
HORVU4Hr1G052720.12 | 1802 | gene=HORVU4Hr1G052720 CDS=946-1800 |
HORVU4Hr1G052720.13 | 2182 | gene=HORVU4Hr1G052720 CDS=531-1880 |
HORVU4Hr1G052720.14 | 2052 | gene=HORVU4Hr1G052720 CDS=3-1784 |
HORVU4Hr1G052720.15 | 2055 | gene=HORVU4Hr1G052720 CDS=3-1787 |
HORVU4Hr1G052720.16 | 1653 | gene=HORVU4Hr1G052720 CDS=2-1624 |
HORVU4Hr1G052720.17 | 1528 | gene=HORVU4Hr1G052720 CDS=3-1526 |
HORVU4Hr1G052720.18 | 1658 | gene=HORVU4Hr1G052720 CDS=189-1658 |
HORVU4Hr1G052720.19 | 1658 | gene=HORVU4Hr1G052720 CDS=189-1658 |
HORVU4Hr1G052720.20 | 1302 | gene=HORVU4Hr1G052720 CDS=226-1302 |
HORVU4Hr1G052720.21 | 1322 | gene=HORVU4Hr1G052720 CDS=1-1074 |
HORVU4Hr1G052720.22 | 441 | gene=HORVU4Hr1G052720 CDS=1-441 |
Exon Structure of HORVU4Hr1G052720
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g19970.1 | +3 | 0.0 | 861 | 418/455 (92%) | protein|CAS1 domain-containing protein 1 precursor, putative, expressed |
TAIR PP10 | AT5G46340 @ ARAPORT AT5G46340.1 @ TAIR |
+3 | 0.0 | 726 | 349/451 (77%) | Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540 |
BRACH PP3 | Bradi1g64180.2.p | +3 | 0.0 | 891 | 435/454 (96%) | pacid=32801052 transcript=Bradi1g64180.2 locus=Bradi1g64180 ID=Bradi1g64180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons