- Transcript HORVU4Hr1G052720.1
- Transcript IDHORVU4Hr1G052720.1
- Gene IDHORVU4Hr1G052720
Barley RTD
Exon Structure of HORVU4Hr1G052720.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 437920383 | 437920064 | + |
| chr4H | 2 | 437921901 | 437921810 | + |
| chr4H | 3 | 437922289 | 437922155 | + |
| chr4H | 4 | 437922435 | 437922379 | + |
| chr4H | 5 | 437922588 | 437922516 | + |
| chr4H | 6 | 437923067 | 437922909 | + |
| chr4H | 7 | 437923504 | 437923355 | + |
| chr4H | 8 | 437923835 | 437923580 | + |
| chr4H | 9 | 437924043 | 437923928 | + |
| chr4H | 10 | 437924264 | 437924178 | + |
| chr4H | 11 | 437924432 | 437924344 | + |
| chr4H | 12 | 437924580 | 437924518 | + |
| chr4H | 13 | 437924741 | 437924685 | + |
| chr4H | 14 | 437924951 | 437924853 | + |
| chr4H | 15 | 437925043 | 437925033 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19970.1 | +3 | 0.0 | 844 | 406/461 (88%) | protein|CAS1 domain-containing protein 1 precursor, putative, expressed |
| TAIR PP10 | AT5G46340 @ ARAPORT AT5G46340.1 @ TAIR |
+3 | 0.0 | 669 | 323/460 (70%) | Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540 |
| BRACH PP3 | Bradi1g64180.2.p | +3 | 0.0 | 879 | 426/461 (92%) | pacid=32801052 transcript=Bradi1g64180.2 locus=Bradi1g64180 ID=Bradi1g64180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1764 bp)
>HORVU4Hr1G052720.1 1764 150831_barley_pseudomolecules CGCACCGACTGTGGGTCCCGTTGTCCATCGCCGGTGGCCCCGCATGCAGTGTCTGCGCGA CTCTCCGTCCGTCGTATCACGCGTACCTCCATCCATCCTCGTTCCCACCTCGCCGTCCGC TTTAAACCGGAGAGGCCTTTTTGCTCTCACGCAAAGCCGCGCTTATTTTCTCTCGGTTAC CTAATTTTTGCCCCCTTCTCCTCCGATTCGCGTTTGGATCCCAGCGCCAAAGCTTGGCGG ATGCTGTAGAAATGGCGGAGGCGCTCGCGTCCGCGGGTGGGCTCGCCATGGCGGCCTCGA CCTCTTTCACGCCCGGCCAGCTTTCTGCTTTTCTGGGATTTCTTTGGGTTCTTGCGGCCT GGGTGTATGCGGAGGTTCTCTTTCATAGGAAGAATGCTGCTTCACTTAAAACACACTCGG ACATCAATTTATCAGATATGGATAGTAGCTCAAACAAAGGAGAGGATCAAACAATGTTAC TGGAGGAGGGTGGTCAAGTAGCTGGTGCAAAGCCAGTTTATGCTTCTTTCACATCACAGA TGCTCAGACTTTTCTGTATGGACCAGACACTTCTTCTGGAGCATCGATTGACACTGAGGG CAATATCTGAGCTTGGAGGCCATCTACTTTACTTTTACATATGTGACCGCACAAATATAT TCGGGGAATCTGGAAAGAATTACAGCCGAGATCTCTTCCTTTTCCTCTATTTTCTTCTTA TCATCGTAGCAGCTATTACTTCCTTCAAGATCCACCAAGATAAGTCCACATTCACTGGAA AATCTATACTATATTTGAATAGGCATCAGACAGAAGAATGGAAGGGTTGGATGCAGGTGC TATTCTTGATGTACCACTACTTCAATGCTAAAGAGATCTACAATGCGATTCGTGTGTTCA TTGCTGCATATGTCTGGATGACTGGGTTTGGTAACTTCTCCTATTATTATGTGCGGAAGG ATTTCAGTCTGGGACGATTTGCTCAGATGATGTGGCGCCTCAATTTCTTTGTGGCATTCT GTTGCATTGTCCTGAATAATGATTACACACTATATTATATTTGCCCTATGCACACTCTTT TCACCCTCATGGTGTATGGTGCTCTTGGAATACTAAACAAGTACAATGAGATTAGATCAG TGATTGCTATAAAATTTGTTGGGTGCTTCTTGGTAGTTATCTTGGTATGGGAAATCCCAG GTGTCTTTGAGATAGTCTGGAGCCCATTCACTTTTCTTCTAGGTTATGATGATCCTTCTA AACCAGATCTCCCTAGGTTGCATGAGTGGCACTTCCGATCTGGACTGGATCGCTACATAT GGATTGTGGGGATGATATATGCCTATTACCATCCAACAGTTGAGAAGTGGATGGAAAAGC TTGAAGAAGCTGAAACAAGAACGAAGCTCTATATTAAGGCCTCTATAGTTACAGTTTCTA TAACGGCTGGGTATTTGTGGTACGAGTACATCTACAAGATGGACAAGATTACCTACAATA AATACCATCCTTACACATCCTGGATCCCCATAACTGTTTACATCTGCCTGCGCAACTTCA CTCAAGAATTCCGGGCGTGCTCTCTCACGCTATTTGCCTGGCTTGGAAAGATTACACTAG AAACATATATATCTCAGTTCCATATCTGGCTCAGAGATCAAAGGTGCCCAATGGGCAACC CAAGTGGCTGTTGACGATAATCCCAGATTACCCACTGCTTAACTTCATGCTCACGACTGC GCTATATGTTGCGGTTTCCCATAG