- Transcript HORVU4Hr1G017340.2
- Transcript IDHORVU4Hr1G017340.2
- Gene IDHORVU4Hr1G017340
Barley RTD
Exon Structure of HORVU4Hr1G017340.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 75934518 | 75931379 | - |
| chr4H | 2 | 75934901 | 75934770 | - |
| chr4H | 3 | 75936418 | 75936189 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g08090.1 | +1 | 0.0 | 1528 | 848/1019 (83%) | protein|expressed protein |
| TAIR PP10 | AT1G77460 @ ARAPORT AT1G77460.2 @ TAIR |
+1 | 0.0 | 949 | 565/1012 (56%) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136 |
| BRACH PP3 | Bradi4g23680.1.p | +1 | 0.0 | 1580 | 917/1046 (88%) | pacid=32790008 transcript=Bradi4g23680.1 locus=Bradi4g23680 ID=Bradi4g23680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3502 bp)
>HORVU4Hr1G017340.2 3502 150831_barley_pseudomolecules GCTGCCGTAATAACGCGACAATGACGGGAGTGATCCGCAAAAGACCCACCCCTCTCTCTC CCTCCCTCCCCACTTCCCCTGTTCCAAAAAGCTTTCGCATCTCTCTCTCTCTCTCTTCAC AGTTCACACCCACACTGCGCGGCACAGTGGGCGAGTGGGCGCGAGACCAAGCGTCGCCTC CTCCTCTCCTCCGCCTCGGTCTCGCCGCCGGACGTCTTCGCCTGCCGCCGGAGGACATAT AAAACAATTAAGATTGTAAACGTTGGTAACTGTTCAATCATGCCGATATCCAACTCAACG GAACCTCGAGATTCTCGAGACCCTACTTCACCTGCGCCATCCACGTCATCTTCTAGATCA AGGGAAGCATGCAATCTTGCAGAAGTTGATGACCCTGAAAGTGCAATGTCCACTGTTGCT CGATTGCTGGAGCAGCTACATGGTAGCTTGACATCACTGCCAGAGAAGGAAGTGGCAATC AAAAGATTACTTGAACTTGCCAAGGCGAAGAAGGATGCAAGGATTTTGATAGGTAGCCAT TCTCAGGCCATGCCATTATTTATATCTATCCTTAGAAGCGGGGCATCTTCAGCCAAAGTA AATGCTGCGGCCCTGCTTAGTGCACTCTGCAAGGAAGAGGATCTGCGTGTCAAGGTTCTC TTAGGAGGTTGCATACCACCCTTGCTCTCTCTCTTGAAGTCTGAATCTGCTGAAGCAAAG AAGGCTGCCGCTGAGGCTATTTTTGAAGTGTCTTCAGGGGGTCTTTCGGATGATCACATC GGCATGAAAATATTTGTGACAGAAGGCGTTGTGCCGACTCTTTGGGATTTGCTCAATCCT AAGTCACGCCAAGATAGAATAGTTGAGGGCTTTGTGACTGGGGCTTTAAGAAATCTCTGT GGAGATAAAGATGGTTATTGGAAGGCCACACTTGAAGCGGGTGGAGTAGAAATTATTACC GGTCTTCTTTCATCCAAAAATACTGCTTCGCAGTCAAATGCTGCCTCCCTCTTGGCACGG TTGATTTCTGCTTTCAGTGATAGCATTCCCAAAATCATAGCTGCTGGGGCTGTTAAGGCC CTTCTTCAGCTTCTGAATCGAGATGATGACATTGCTGTTCGTGAAAGTGCAGCTGATGCT TTGGAGGCCTTATCTTCCAAGTCTACCATTGCAAAGAAAGCTGTGGTCGATGCAGGCGGC CTCCCTGTTTTGATTGGAGCTGTTGTAGCGCCCTCAAAAGAGTGCATGCGAGGGGTTACC TGCCATTCTCTACAAAGCCATGCCGTTTGTGCTTTATCAAATATTTGCGGTGGAGCCACT TCGTTGTTGCTTTACCTGGGAGAGCTTTGCCAATCACCCCGGTCAGCTGTGTCCCTTGCT GACATTCTTGGAGCACTTGCATATACGCTGATGGTGTATGATGGCACTGATGGTAAATTC TTTGATCCTGTTGAGATAGAAAGCATTTTGGTTGTGCTCCTGAAATCCCATGACAGTAAG CTTTTGCTTGATCGTATTCTTGAAGCTTTAGCAAGTCTATATGCAAATGCATGTTTCTCT GGCAGACTTGATCACTCAAATGCAAAGAAGGTTCTTGTTGGGCTGGTCACTATGGCTACC GACGATGTTCAAGACCATCTTGTTCATGCCTTAACTAGCTTGTGCTGTGATGGTTTTGGA TTGTGGGACGCTCTTGGAAAGAGAGAAGGAGTTCAGTTGCTAATATCATTACTTGGACTT TCCAGTGAGCAGCATCAGGAGTATGCAGTTTCTTTGTTGGCTATCTTGAGTGATGAAGTA GATGACAGTAAGTGGGCAATAACAGCTGCTGGAGGTATCCCTCCACTTGTCCAACTACTT GAAACAGGATCTCAAAGGGCAAAGGAGGATGCAGCTCATATCATATGCAACTTGTGCTGT CACAGTGATGATATCAGGGCATGTGTTGAGAGTGCTGGTGCTGTTCTGGCGCTGCTTTGG CTTCTAAAGAGTGACAGTCCTCGTGGACAAGAGGCGTCAGTCAAAGCACTCAAGGTGCTT ATACGGTCTGCTGATTCCGCCACAATCAATCAGCTGTTAGCACTGCTGCTCAGTGACTCA GTGAGCTCAAAGGCACACGCCATTACAGTTCTTGGGCATGTCCTTGTGCTGGCTCCTCAA AGAGACCTAATCCAGAATGGAGCTCCTGCTAATAAAGGGCTTAGGTCTCTTGTTCTTGTT CTTGACTCGTCAAATGAAGAATCTCAGGAATGTGCTGCAACTGTGTTGGCTGATATTTTC AGTATGCGTCAGGATATTTGCGACATCTTAGCAACTGATGAAATTGTTCAGCCATTCATG AAGCTTTTGACAAGTGGAAATCAAGTTATGGCAACACAATCTGCTCGAGCTTTAGGAGCA CTCTCGCGCTCGGCTAATACCATGTCGAAGAACAAGATGTCATGTATAGCTGAAGGTGAC GTGCAACCTCTCATAGAGATGGCCAAGACATCATCCATTGATGCGGCTGAAGCGGCAATT GCTGCATTGGCAAATCTCTTATCAGATTCCCAGATTGCTAAGGAGGCGCTAGGTGATAAT ATTGTCCAAGCTTTGACTAGAGTCCTAAAGGAGGGGAGTTTAGATGGCAAAATTAGTGCT TCACGGTCACTTTATCACTTGCTCAACCAATTCCCCCTCTGTGAAGTTTTTCCAGATTAC TCACTCTGCTGCTTTATAATTCATGCACTGCTGGTGTGTCTATCCGGTATCAGTTTGGAA AAAGTTACTAGTTTGGATCCCCTGGATGTGCTTGCATTGATGGTGATGACCAAGGAGGGT GCTCATTTTAGCCCCCCTCTGCGGACTGCCTTTCTTGAAGCCCCAGAAGGTTTAGAACCT CTGGTCCGCTGTATCAGTGTTGGGCTCCCCCCTATTCAAGACAAATCCATTCAAATTCTC GCAAGGCTATGTCAGGACCAATCTTCTCTGCTTAGTGAGCACATAAACAGAAGTGAAGGC TGCATTGATTCTCTTGTCAGTAGAGTTATGGAATCAACAAACATGGAAATAAGAATCTCC AGTGCAATCACCCTCATATCTGCGTTGAAGGACAAGAGAGAACATTCAATTGAAGTTCTT GAAGCATCTGGACATCTGAAGAGTCTAATATCTGCACTCATTGATATGTTGAAGCAAGAG TCCACTTCAACATCCCTAGATATTGAAGTCTGGAAACCTTACACAGAGAAGAGTTTGTTC AATTGTGAGCAGGATGTTTTGGATGTGCCTGAATCAGGGAAGGTTCTGGAAGAAACTGTT GCACGTTTGCTCTCACTAATTTGTTCTTCTCATCCCAGGAGTAAACTTACTGTTATGGAT CTTGGTGGTGTTGAGATTGTTTCTGATAAACTTGCTTCTGCTAGCCGACAGGTGCATGTT TCACTTTTTAATCTCTATTTTCTATTGTGCTGCCATTACATTTTTCTTGTCTCTTCAGCT GCAATCACTTGATAAATTTAAG