Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u27304	88.5	-	-	5040	-659	Containing

Transcripts from Gene HORVU4Hr1G017340

Transcript	Length(bp)	Description
HORVU4Hr1G017340.1	3514	gene=HORVU4Hr1G017340 CDS=292-3504
HORVU4Hr1G017340.2	3502	gene=HORVU4Hr1G017340 CDS=280-3492
HORVU4Hr1G017340.3	3366	gene=HORVU4Hr1G017340 CDS=159-3365

Exon Structure of HORVU4Hr1G017340

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os11g08090.1	+1	0.0	1526	848/1019 (83%)	protein|expressed protein
TAIR PP10	AT1G77460 @ ARAPORT AT1G77460.2 @ TAIR	+1	0.0	950	563/1010 (56%)	Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136
BRACH PP3	Bradi4g23680.2.p	+1	0.0	1580	917/1046 (88%)	pacid=32790009 transcript=Bradi4g23680.2 locus=Bradi4g23680 ID=Bradi4g23680.2.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons