Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G006320.27

ChromosomeExonStartStopDirection
chr4H11499207414991744-
chr4H21499341514993166-
chr4H31499366714993567-
chr4H41499385514993772-
chr4H51499458714994515-
chr4H61499648214996482-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g49520.1 +3 9e-59 193 109/141 (77%) protein|pinin/SDK/memA protein, putative, expressed
TAIR PP10 AT1G15200 @ ARAPORT
AT1G15200.4 @ TAIR		 +3 1e-65 211 120/243 (49%) Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=442
BRACH PP3 Bradi1g10810.1.p +3 4e-98 294 187/279 (67%) pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (840 bp)

>HORVU4Hr1G006320.27 840 150831_barley_pseudomolecules
GGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTATGCGTAGATCAG
AGGCTCAGCAGAAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGATTGCGGCAGCAAG
TGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTGCTCGAGTAGCTG
CTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTGAGCATCACAAAA
AGCTGTCCAGTTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATATTGACAAT
TAAATTGAGGGAAGATGCGTTTCTGATTGTACGCAAATCTTGATGTTTGATGTCTATAGG
GGTTTCCATATCCACTCATTATACTATATGTTTGTTCCTTGTTTGATTCCATTTGTATTT
TCAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGGCTAAACCAATAGTTGATGATC
CGCTTATTGTTGAGCAAAACAAGGAAAAGGCATTTGAAGAATGGAAATCTGTGCGCAGAA
CGGAGCTCACACAGTTTCAAAAGCAAGTTGAGGAGCAGTATCTGTCTAACGTTGAGAGGC
AGCTGGAAAGAATTCAGAATGCCCGGAATGCTCGGAGGGGGAACGTGCCTGCTAACATGC
AGGAAATGGACAAGGAGCTGGACACACACAGGGCGGAGCATGGCCCCAAGGCTCGGCGGA
TCCCCGACGGTGGCAACGACGAGGATGATGATGTGGACGTGGACGACATGGCCGCGGAGG
ACGACCTGATGGATGAAGTGCTTGGCGTTAATGAGGCGATCAACGAGGACCCGACCAAGC