Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u26508	99.9	-	-	7745	96	Partial-Overlap

Transcripts from Gene HORVU4Hr1G006320

Transcript	Length(bp)	Description
HORVU4Hr1G006320.1	1454	gene=HORVU4Hr1G006320 CDS=455-892
HORVU4Hr1G006320.2	1842	gene=HORVU4Hr1G006320 CDS=1-843
HORVU4Hr1G006320.3	1916	gene=HORVU4Hr1G006320 CDS=2-949
HORVU4Hr1G006320.4	1569	gene=HORVU4Hr1G006320 CDS=2-469
HORVU4Hr1G006320.5	1341	gene=HORVU4Hr1G006320 CDS=1-1044
HORVU4Hr1G006320.6	1570	gene=HORVU4Hr1G006320 CDS=2-1273
HORVU4Hr1G006320.7	1395	gene=HORVU4Hr1G006320 CDS=1-606
HORVU4Hr1G006320.8	1869	gene=HORVU4Hr1G006320 CDS=1-993
HORVU4Hr1G006320.9	1590	gene=HORVU4Hr1G006320 CDS=2-844
HORVU4Hr1G006320.10	1713	gene=HORVU4Hr1G006320 CDS=1-1506
HORVU4Hr1G006320.11	1631	gene=HORVU4Hr1G006320 CDS=3-632
HORVU4Hr1G006320.12	1632	gene=HORVU4Hr1G006320 CDS=3-713
HORVU4Hr1G006320.13	1421	gene=HORVU4Hr1G006320 CDS=1-645
HORVU4Hr1G006320.14	1452	gene=HORVU4Hr1G006320 CDS=3-704
HORVU4Hr1G006320.15	1279	gene=HORVU4Hr1G006320 CDS=1-615
HORVU4Hr1G006320.16	1047	gene=HORVU4Hr1G006320 CDS=453-890
HORVU4Hr1G006320.17	1584	gene=HORVU4Hr1G006320 CDS=3-1427
HORVU4Hr1G006320.18	1721	gene=HORVU4Hr1G006320 CDS=2-997
HORVU4Hr1G006320.19	1544	gene=HORVU4Hr1G006320 CDS=3-620
HORVU4Hr1G006320.20	1491	gene=HORVU4Hr1G006320 CDS=2-1378
HORVU4Hr1G006320.21	1130	gene=HORVU4Hr1G006320 CDS=467-1036
HORVU4Hr1G006320.22	1332	gene=HORVU4Hr1G006320 CDS=3-644
HORVU4Hr1G006320.23	1492	gene=HORVU4Hr1G006320 CDS=1-1422
HORVU4Hr1G006320.24	729	gene=HORVU4Hr1G006320 CDS=1-729
HORVU4Hr1G006320.25	1245	gene=HORVU4Hr1G006320 CDS=1-1245
HORVU4Hr1G006320.26	1233	gene=HORVU4Hr1G006320 CDS=1-1233
HORVU4Hr1G006320.27	840	gene=HORVU4Hr1G006320 CDS=453-839

Exon Structure of HORVU4Hr1G006320

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g49520.2	+2	7e-83	262	153/203 (75%)	protein|pinin/SDK/memA protein, putative, expressed
TAIR PP10	AT1G15200 @ ARAPORT AT1G15200.4 @ TAIR	+2	4e-85	273	168/354 (47%)	Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=442
BRACH PP3	Bradi1g10810.1.p	+2	2e-133	397	253/403 (63%)	pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons