Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G006320.24

ChromosomeExonStartStopDirection
chr4H11499207414991694-
chr4H21499325014993166-
chr4H31499366714993567-
chr4H41499385514993772-
chr4H51499459214994515-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g49520.1 +1 6e-123 356 192/243 (79%) protein|pinin/SDK/memA protein, putative, expressed
TAIR PP10 AT1G15200 @ ARAPORT
AT1G15200.1 @ TAIR		 +1 1e-74 233 117/190 (62%) Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=423
BRACH PP3 Bradi1g10810.1.p +1 3e-134 384 209/243 (86%) pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (729 bp)

>HORVU4Hr1G006320.24 729 150831_barley_pseudomolecules
ATGCAGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTATGCGTAGA
TCAGAGGCTCAGCAGAAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGATTGCGGCAG
CAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTGCTCGAGTA
GCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTGAGCATCAC
AAAAAGCTGTCCAGTTTCTTAAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGGCT
AAACCAATAGTTGATGATCCGCTTATTGTTGAGCAAAACAAGGAAAAGGCATTTGAAGAA
TGGAAATCTGTGCGCAGAACGGAGCTCACACAGTTTCAAAAGCAAGTTGAGGAGCAGTAT
CTGTCTAACGTTGAGAGGCAGCTGGAAAGAATTCAGAATGCCCGGAATGCTCGGAGGGGG
AACGTGCCTGCTAACATGCAGGAAATGGACAAGGAGCTGGACACACACAGGGCGGAGCAT
GGCCCCAAGGCTCGGCGGATCCCCGACGGTGGCAACGACGAGGATGATGATGTGGACGTG
GACGACATGGCCGCGGAGGACGACCTGATGGATGAAGTGCTTGGCGTTAATGAGGCGATC
AACGAGGACCCGACCAAGCCATCTGAAGAGGCTACCGATGTTGCCCCTGTACCCGAGGAG
GCACAGTAG