- Transcript HORVU4Hr1G006320.2
- Transcript IDHORVU4Hr1G006320.2
- Gene IDHORVU4Hr1G006320
Barley RTD
Exon Structure of HORVU4Hr1G006320.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 14990298 | 14989911 | - |
| chr4H | 2 | 14992074 | 14991677 | - |
| chr4H | 3 | 14993415 | 14993166 | - |
| chr4H | 4 | 14993667 | 14993567 | - |
| chr4H | 5 | 14993855 | 14993772 | - |
| chr4H | 6 | 14994586 | 14994515 | - |
| chr4H | 7 | 14996598 | 14996482 | - |
| chr4H | 8 | 14996852 | 14996718 | - |
| chr4H | 9 | 14997015 | 14996956 | - |
| chr4H | 10 | 14997210 | 14997103 | - |
| chr4H | 11 | 14997449 | 14997321 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g49520.1 | +1 | 3e-133 | 396 | 249/401 (62%) | protein|pinin/SDK/memA protein, putative, expressed |
| TAIR PP10 | AT1G15200 @ ARAPORT AT1G15200.4 @ TAIR |
+1 | 5e-85 | 273 | 168/354 (47%) | Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=442 |
| BRACH PP3 | Bradi1g10810.1.p | +1 | 2e-161 | 468 | 282/403 (70%) | pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1842 bp)
>HORVU4Hr1G006320.2 1842 150831_barley_pseudomolecules CCTCCCTCGCGCAGCCAAACCCTCCCTCCCCCCCTCTCTCCATCGCCGACGACGATGGCC GCCGCGGCGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAAGAGCTCCAGCGCCAG CACCGCGAGATCAGCGAGCGCCTGCGCGACCCCCGAGGCCTTCGACGCGGCGCTCCCGCC GCCGGCCTCGGCCCGGGCCCCGGAGGCCCCCGCCCGCTCCGCGGCTTCGCCAGACCCGCC CCGGAGCCGGCGGACCAGCCCGAGCCCAAGCGCCGGCTTCTGTCTGCCGTGGTTAAAGTG GATGGCTCTGGAACTAATGAGGATGACGCAGAGGGGCGAGGGGATGAGCCAACTGCCGCT CAAGGTGGCGAGAGGAGGGGAGCCAGTAATGGTGGGTTCAGGAGGGATGGAAGCCAGTGG GTATCCAGGAGGGAGCTTGATAATCAGCTGCCAGAGCCTCTCCCGAGGCCGGCTCCCAAG GAAGAGGACCAGAGCTTGGTGAGGAGGAACAAGAGAATGCTGGGGAAGCTTCTTGTTGGC ACGCTAGAGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTATGCGT AGATCAGAGGCTCAGCAGAAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGATTGCGG CAGCAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTGCTCGA GTAGCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTGAGCAT CACAAAAAGCTGTCCAGTTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATCCATAT TGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTACGCAAATCTTGATGTTTGATGT CTATAGGGGTTTCCATATCCACTCATTATACTATATGTTTGTTCCTTGTTTGATTCCATT TGTATTTTCAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGGCTAAACCAATAGTT GATGATCCGCTTATTGTTGAGCAAAACAAGGAAAAGGCATTTGAAGAATGGAAATCTGTG CGCAGAACGGAGCTCACACAGTTTCAAAAGCAAGTTGAGGAGCAGTATCTGTCTAACGTT GAGAGGCAGCTGGAAAGAATTCAGAATGCCCGGAATGCTCGGAGGGGGAACGTGCCTGCT AACATGCAGGAAATGGACAAGGAGCTGGACACACACAGGGCGGAGCATGGCCCCAAGGCT CGGCGGATCCCCGACGGTGGCAACGACGAGGATGATGATGTGGACGTGGACGACATGGCC GCGGAGGACGACCTGATGGATGAAGTGCTTGGCGTTAATGAGGCGATCAACGAGGACCCG ACCAAGCCATCTGAAGAGGCTACCGATGTTGCCCCTGTACCCGAGGAGGCACAGTAGGCA AAGTTATTTGCAAGCACGGGAAATCGAAGGTACTCTAGACTCTAAGTGCAGCCCATTGAA GACGACAACTCAAGCTTTGTTCAACCGATATGTGATGCCTGAGTTGGAACAATCGGCGTT CCTTTCTTGATACTTATGTAATAAGTTACTTTAATAAAGACGGTTTTGTGCATTGATCGA TGGAAAGGCCAGAGGTACTCCCTCATTTTCAGGAAAAAATGTGTTCAAGTGAAAAGTGGA TTCAAACAAGATGGATTTTGGTGTAGACATCACCATATAACACTTAAGCTCGAGGTCATA TATCTTCTGTTATGTATATTCAAGGAGCATTCATGACTTTACAAACAAGAACTAGGTAGT GTAAAGGAAGATACATACATGAATATAAAATACATATATTTA