Exon Structure of HORVU4Hr1G006320.11

ChromosomeExonStartStopDirection
chr4H11499207414991506-
chr4H21499341514993166-
chr4H31499366714993567-
chr4H41499385614993772-
chr4H51499458614994515-
chr4H61499659814996482-
chr4H71499685214996718-
chr4H81499701514996956-
chr4H91499721014997103-
chr4H101499745414997321-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g49520.1 +1 3e-63 213 121/158 (77%) protein|pinin/SDK/memA protein, putative, expressed
TAIR PP10 AT1G15200 @ ARAPORT
AT1G15200.3 @ TAIR
+1 5e-67 192 111/220 (50%) Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=470
BRACH PP3 Bradi1g10810.1.p +1 1e-69 230 131/158 (83%) pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1631 bp)

>HORVU4Hr1G006320.11 1631 150831_barley_pseudomolecules
CCCACCCTCCCTCGCGCAGCCAAACCCTCCCTCCCCCCCTCTCTCCATCGCCGACGACGA
TGGCCGCCGCGGCGGAGAAGACGGCCGAGGAGATCCGCCGCGAGCTCCAAGAGCTCCAGC
GCCAGCACCGCGAGATCAGCGAGCGCCTGCGCGACCCCCGAGGCCTTCGACGCGGCGCTC
CCGCCGCCGGCCTCGGCCCGGGCCCCGGAGGCCCCCGCCCGCTCCGCGGCTTCGCCAGAC
CCGCCCCGGAGCCGGCGGACCAGCCCGAGCCCAAGCGCCGGCTTCTGTCTGCCGTGGTTA
AAGTGGATGGCTCTGGAACTAATGAGGATGACGCAGAGGGGCGAGGGGATGAGCCAACTG
CCGCTCAAGGTGGCGAGAGGAGGGGAGCCAGTAATGGTGGGTTCAGGAGGGATGGAAGCC
AGTGGGTATCCAGGAGGGAGCTTGATAATCAGCTGCCAGAGCCTCTCCCGAGGCCGGCTC
CCAAGGAAGAGGACCAGAGCTTGGTGAGGAGGAACAAGAGAATGCTGGGGAAGCTTCTTG
TTGGCACGCTAGAGAAATTTCAGCAAGAGAACAAAAAACTTTCCAACTCAGAGGCTTTTA
TGCGTAGATCAGAGGCTCAGCAGAAGGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGA
TTGCGGCAGCAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGT
GCTCGAGTAGCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCT
GAGCATCACAAAAAGCTGTCCAGTTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTAT
CCATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGTACGCAAATCTTGATGTT
TGATGTCTATAGGGGTTTCCATATCCACTCATTATACTATATGTTTGTTCCTTGTTTGAT
TCCATTTGTATTTTCAGGACAAAAGCTGAACCAGCTATTTATTACATGCCGGCTAAACCA
ATAGTTGATGATCCGCTTATTGTTGAGCAAAACAAGGAAAAGGCATTTGAAGAATGGAAA
TCTGTGCGCAGAACGGAGCTCACACAGTTTCAAAAGCAAGTTGAGGAGCAGTATCTGTCT
AACGTTGAGAGGCAGCTGGAAAGAATTCAGAATGCCCGGAATGCTCGGAGGGGGAACGTG
CCTGCTAACATGCAGGAAATGGACAAGGAGCTGGACACACACAGGGCGGAGCATGGCCCC
AAGGCTCGGCGGATCCCCGACGGTGGCAACGACGAGGATGATGATGTGGACGTGGACGAC
ATGGCCGCGGAGGACGACCTGATGGATGAAGTGCTTGGCGTTAATGAGGCGATCAACGAG
GACCCGACCAAGCCATCTGAAGAGGCTACCGATGTTGCCCCTGTACCCGAGGAGGCACAG
TAGGCAAAGTTATTTGCAAGGTAGGCACTTACGCATTATGATTCTATATCGTTGTAGTTG
CCCTCTTCTGTTGTGACTGTATTGTTGTTGGGTTTTTGTCTTTGGGAATGTTGTGAGCTG
TGTTTGCTGTTGAGGCCATATCCATACTTTTCATTATTGTTATTGTCATTCGTACGTACT
CTGCGTCTGCT