- Transcript HORVU4Hr1G005710.42
- Transcript IDHORVU4Hr1G005710.42
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.42
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13553276 | - |
| chr4H | 2 | 13554582 | 13554251 | - |
| chr4H | 3 | 13555708 | 13555595 | - |
| chr4H | 4 | 13556062 | 13555928 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13560835 | 13559662 | - |
| chr4H | 8 | 13561727 | 13560935 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g29210.1 | +2 | 1e-73 | 247 | 150/320 (47%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +2 | 1e-80 | 267 | 160/319 (50%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2790 bp)
>HORVU4Hr1G005710.42 2790 150831_barley_pseudomolecules GCAGGCGTTTCCTCCAATAAGCTCGAGTGGCTCCCCGATTTGGAGAAGGGCCCGGTCGCC TCTATCGTTGTTCGTCGCCACCATGGGTGTGGTAAGCGAGTTTGCGATGGGTGCGATGCT GGATCCCGCTGACAGGTTTCAAGCTCATCAGCAGCGGCTGTTCTGGCGGGGCTACGGCGC CGGTTCTCAGTTCATGGCGTGGCTGTGCTGTTGCGAAGGCATTGTGGCCCGAGGTGGTTC GTCCCGGGCGACGGCAAAGATTTCATCCGCGAAGAAGCCGTAGAGGACCTGATTGCAATT TTGCTTTCCGGCCCGGGGTCCTCCTTGTAAAAGCCAGGGACTTTAATGCTATTTCCTTTT CTGCTGAGTCCTTATATGCTCTTTGTACCGTAACTGTATCAGATATTAACGGAGCGTCTA GGCCCTTCGCGGCCTTTACAGTTAAAAAAAAAAGAAAAAAAGAAAGACGACGGCGCTCGC TCGCCCATTTTCACTTGTCCTCGCGCTCGCGCGTACGCCTCGCTTTAGTTTCGTCTTCCT CGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAGCACATC CTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGGTAAGCGCCTCTC CCCACATCCCATCCCTAACCCTACCCCCAACCCGGATCCTGACTCCGCCCCCTCCGGCCC GCCCCAGTCCACGACCCGATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTC CCCCGCTTAAAGTCGCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTG ATTGAGGACTTGAGGGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATC GCGGCCAGGGGGAGCCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTG GATCTGGTCGACAAGGAAGGTCCAACTATCTTCAAAACCCTAATCTTTCGGTGCAGGCTT CGTCGAATTGCATGGAGTGCCTATTTTACATGCTGGAATTTGTTGTTCGCTAGGGCTGCT TCATCTGTAGGTCAGGTCTCACGATATCCGACTGTTTTGTGCTTTCTCTGGGTTTGGCAT AGAGGTGCATTATGAGAGCCAGCTTTTGCCATGGCTCCAGGCTCAGCGCAACACAGTCCG GCAACCATAAACATAGCCTAAGATCATCTACGTCAGTATGAACCAATGTATCATAGGCAC CAATATTTTTCTCACCAAATAAAATCATGTTTTGTCATATCCTGTTGTGCTAACTCATGA TCATGCAGCTTTATACGGAAAAAGTCGGCCTTTTTAAGGAAGAAATAAGTCGGTCTTCAT TATGATACTGAATGTGAATACCCTACATAAGCACCGTTCATATAAATAATTAAATAGGCT ACTCTTTGAGGGCAAATTAATGTTTATTTTAGGATAGTTTGGTTGTTTAGTTATTGCACA CATGTATGCACCCCAGCTCTGAGGATGTATTTGATTCTTCTATTCGGGTAGTCGAATGTC TAATTTTCATGCGTCAGTTCCATTTAACCAATACTCTCTCGAGCATTATGAAAATCCTGC GTCATATCGTATCTAACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGCCATATCTAAAT TCTATGCTCTCAGAGAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGGTATTCTTTTGG AGATAAGACATGCTTTGATACAAAAAAGATCTCATTTCTTGCTACGCTGAGAAGTGCTTT GATATAATTTCATTTTTGTGTGTTTGTTTGCTTTATAGGTAGAACACCTCTGTTTTTTGC AACATACTGCAATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAA AGCCGATAACAATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAAT GGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACC ACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAG TGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAA CTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTT GTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGG ACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGGTTCAGAAGGAGCC TATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAA GAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGG TGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAA GGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCG CCGGCAGGGTGAAGCTCTGATGCTACTGAAGGTTACATAGAGGATATGGCTGACTGTTTT CTCTTGGTATTGCAAATTGTTTATGGTCGCTCACTTGGTCTTTTATCATCAGGACTATGA GGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGA GGATGCATTACGGGAAGCTATGAAGTCCTT