Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u2646199.5--9461-46Containing




Transcripts from Gene HORVU4Hr1G005710

TranscriptLength(bp)Description
HORVU4Hr1G005710.12669gene=HORVU4Hr1G005710 CDS=1419-2045
HORVU4Hr1G005710.21704gene=HORVU4Hr1G005710 CDS=102-707
HORVU4Hr1G005710.31737gene=HORVU4Hr1G005710 CDS=3-740
HORVU4Hr1G005710.42721gene=HORVU4Hr1G005710 CDS=1745-2233
HORVU4Hr1G005710.51265gene=HORVU4Hr1G005710 CDS=2-739
HORVU4Hr1G005710.62679gene=HORVU4Hr1G005710 CDS=2-568
HORVU4Hr1G005710.72654gene=HORVU4Hr1G005710 CDS=1502-2128
HORVU4Hr1G005710.83097gene=HORVU4Hr1G005710 CDS=1945-2571
HORVU4Hr1G005710.91784gene=HORVU4Hr1G005710 CDS=1-783
HORVU4Hr1G005710.102666gene=HORVU4Hr1G005710 CDS=137-553
HORVU4Hr1G005710.112814gene=HORVU4Hr1G005710 CDS=3-485
HORVU4Hr1G005710.121576gene=HORVU4Hr1G005710 CDS=2-1054
HORVU4Hr1G005710.131915gene=HORVU4Hr1G005710 CDS=251-922
HORVU4Hr1G005710.141611gene=HORVU4Hr1G005710 CDS=83-1090
HORVU4Hr1G005710.151973gene=HORVU4Hr1G005710 CDS=828-1454
HORVU4Hr1G005710.161490gene=HORVU4Hr1G005710 CDS=3-971
HORVU4Hr1G005710.171030gene=HORVU4Hr1G005710 CDS=1-513
HORVU4Hr1G005710.181596gene=HORVU4Hr1G005710 CDS=69-1079
HORVU4Hr1G005710.191737gene=HORVU4Hr1G005710 CDS=3-749
HORVU4Hr1G005710.201807gene=HORVU4Hr1G005710 CDS=2-934
HORVU4Hr1G005710.212665gene=HORVU4Hr1G005710 CDS=2-562
HORVU4Hr1G005710.222572gene=HORVU4Hr1G005710 CDS=1606-2055
HORVU4Hr1G005710.232597gene=HORVU4Hr1G005710 CDS=719-1390
HORVU4Hr1G005710.242318gene=HORVU4Hr1G005710 CDS=814-1803
HORVU4Hr1G005710.252847gene=HORVU4Hr1G005710 CDS=112-528
HORVU4Hr1G005710.261976gene=HORVU4Hr1G005710 CDS=2-769
HORVU4Hr1G005710.272750gene=HORVU4Hr1G005710 CDS=892-1545
HORVU4Hr1G005710.283188gene=HORVU4Hr1G005710 CDS=2225-2674
HORVU4Hr1G005710.293267gene=HORVU4Hr1G005710 CDS=2304-2753
HORVU4Hr1G005710.302193gene=HORVU4Hr1G005710 CDS=630-1679
HORVU4Hr1G005710.312277gene=HORVU4Hr1G005710 CDS=615-1328
HORVU4Hr1G005710.321651gene=HORVU4Hr1G005710 CDS=1-759
HORVU4Hr1G005710.331183gene=HORVU4Hr1G005710 CDS=2-844
HORVU4Hr1G005710.34580gene=HORVU4Hr1G005710 CDS=107-556
HORVU4Hr1G005710.352149gene=HORVU4Hr1G005710 CDS=2-538
HORVU4Hr1G005710.362179gene=HORVU4Hr1G005710 CDS=1448-1954
HORVU4Hr1G005710.372103gene=HORVU4Hr1G005710 CDS=3-548
HORVU4Hr1G005710.381776gene=HORVU4Hr1G005710 CDS=745-1752
HORVU4Hr1G005710.39864gene=HORVU4Hr1G005710 CDS=444-863
HORVU4Hr1G005710.401704gene=HORVU4Hr1G005710 CDS=657-1262
HORVU4Hr1G005710.411628gene=HORVU4Hr1G005710 CDS=645-1106
HORVU4Hr1G005710.422790gene=HORVU4Hr1G005710 CDS=739-1155
HORVU4Hr1G005710.431046gene=HORVU4Hr1G005710 CDS=1-1044



Exon Structure of HORVU4Hr1G005710


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g42350.1 +3 1e-81 272 158/303 (52%) protein|ankyrin, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g23634.1.p +3 1e-87 288 161/301 (53%) pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons