- Gene HORVU4Hr1G005710
- Gene IDHORVU4Hr1G005710
- Location chr4H: 13552313 - 13561773
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
BART1_0-u26461 | 99.5 | - | - | 9461 | -46 | Containing |
Transcripts from Gene HORVU4Hr1G005710
Transcript | Length(bp) | Description |
---|---|---|
HORVU4Hr1G005710.1 | 2669 | gene=HORVU4Hr1G005710 CDS=1419-2045 |
HORVU4Hr1G005710.2 | 1704 | gene=HORVU4Hr1G005710 CDS=102-707 |
HORVU4Hr1G005710.3 | 1737 | gene=HORVU4Hr1G005710 CDS=3-740 |
HORVU4Hr1G005710.4 | 2721 | gene=HORVU4Hr1G005710 CDS=1745-2233 |
HORVU4Hr1G005710.5 | 1265 | gene=HORVU4Hr1G005710 CDS=2-739 |
HORVU4Hr1G005710.6 | 2679 | gene=HORVU4Hr1G005710 CDS=2-568 |
HORVU4Hr1G005710.7 | 2654 | gene=HORVU4Hr1G005710 CDS=1502-2128 |
HORVU4Hr1G005710.8 | 3097 | gene=HORVU4Hr1G005710 CDS=1945-2571 |
HORVU4Hr1G005710.9 | 1784 | gene=HORVU4Hr1G005710 CDS=1-783 |
HORVU4Hr1G005710.10 | 2666 | gene=HORVU4Hr1G005710 CDS=137-553 |
HORVU4Hr1G005710.11 | 2814 | gene=HORVU4Hr1G005710 CDS=3-485 |
HORVU4Hr1G005710.12 | 1576 | gene=HORVU4Hr1G005710 CDS=2-1054 |
HORVU4Hr1G005710.13 | 1915 | gene=HORVU4Hr1G005710 CDS=251-922 |
HORVU4Hr1G005710.14 | 1611 | gene=HORVU4Hr1G005710 CDS=83-1090 |
HORVU4Hr1G005710.15 | 1973 | gene=HORVU4Hr1G005710 CDS=828-1454 |
HORVU4Hr1G005710.16 | 1490 | gene=HORVU4Hr1G005710 CDS=3-971 |
HORVU4Hr1G005710.17 | 1030 | gene=HORVU4Hr1G005710 CDS=1-513 |
HORVU4Hr1G005710.18 | 1596 | gene=HORVU4Hr1G005710 CDS=69-1079 |
HORVU4Hr1G005710.19 | 1737 | gene=HORVU4Hr1G005710 CDS=3-749 |
HORVU4Hr1G005710.20 | 1807 | gene=HORVU4Hr1G005710 CDS=2-934 |
HORVU4Hr1G005710.21 | 2665 | gene=HORVU4Hr1G005710 CDS=2-562 |
HORVU4Hr1G005710.22 | 2572 | gene=HORVU4Hr1G005710 CDS=1606-2055 |
HORVU4Hr1G005710.23 | 2597 | gene=HORVU4Hr1G005710 CDS=719-1390 |
HORVU4Hr1G005710.24 | 2318 | gene=HORVU4Hr1G005710 CDS=814-1803 |
HORVU4Hr1G005710.25 | 2847 | gene=HORVU4Hr1G005710 CDS=112-528 |
HORVU4Hr1G005710.26 | 1976 | gene=HORVU4Hr1G005710 CDS=2-769 |
HORVU4Hr1G005710.27 | 2750 | gene=HORVU4Hr1G005710 CDS=892-1545 |
HORVU4Hr1G005710.28 | 3188 | gene=HORVU4Hr1G005710 CDS=2225-2674 |
HORVU4Hr1G005710.29 | 3267 | gene=HORVU4Hr1G005710 CDS=2304-2753 |
HORVU4Hr1G005710.30 | 2193 | gene=HORVU4Hr1G005710 CDS=630-1679 |
HORVU4Hr1G005710.31 | 2277 | gene=HORVU4Hr1G005710 CDS=615-1328 |
HORVU4Hr1G005710.32 | 1651 | gene=HORVU4Hr1G005710 CDS=1-759 |
HORVU4Hr1G005710.33 | 1183 | gene=HORVU4Hr1G005710 CDS=2-844 |
HORVU4Hr1G005710.34 | 580 | gene=HORVU4Hr1G005710 CDS=107-556 |
HORVU4Hr1G005710.35 | 2149 | gene=HORVU4Hr1G005710 CDS=2-538 |
HORVU4Hr1G005710.36 | 2179 | gene=HORVU4Hr1G005710 CDS=1448-1954 |
HORVU4Hr1G005710.37 | 2103 | gene=HORVU4Hr1G005710 CDS=3-548 |
HORVU4Hr1G005710.38 | 1776 | gene=HORVU4Hr1G005710 CDS=745-1752 |
HORVU4Hr1G005710.39 | 864 | gene=HORVU4Hr1G005710 CDS=444-863 |
HORVU4Hr1G005710.40 | 1704 | gene=HORVU4Hr1G005710 CDS=657-1262 |
HORVU4Hr1G005710.41 | 1628 | gene=HORVU4Hr1G005710 CDS=645-1106 |
HORVU4Hr1G005710.42 | 2790 | gene=HORVU4Hr1G005710 CDS=739-1155 |
HORVU4Hr1G005710.43 | 1046 | gene=HORVU4Hr1G005710 CDS=1-1044 |
Exon Structure of HORVU4Hr1G005710
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g42350.1 | +3 | 1e-81 | 272 | 158/303 (52%) | protein|ankyrin, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g23634.1.p | +3 | 1e-87 | 288 | 161/301 (53%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons