- Transcript HORVU4Hr1G005710.41
- Transcript IDHORVU4Hr1G005710.41
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.41
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13553275 | - |
| chr4H | 2 | 13554582 | 13554251 | - |
| chr4H | 3 | 13555708 | 13555595 | - |
| chr4H | 4 | 13556062 | 13555928 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13559790 | 13559662 | - |
| chr4H | 8 | 13561755 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g29210.1 | +3 | 1e-77 | 250 | 153/325 (47%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +3 | 3e-85 | 270 | 158/319 (50%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1628 bp)
>HORVU4Hr1G005710.41 1628 150831_barley_pseudomolecules GGTACCATCTGCCGTGGTGCGGGTGGACGCAGGCGTTTCCTCCAATAAGCTCGAGTGGCT CCCCGATTTGGAGAAGGGCCCGGTCGCCTCTATCGTTGTTCGTCGCCACCATGGGTGTGG TAAGCGAGTTTGCGATGGGTGCGATGCTGGATCCCGCTGACAGGTTTCAAGCTCATCAGC AGCGGCTGTTCTGGCGGGGCTACGGCGCCGGTTCTCAGTTCATGGCGTGGCTGTGCTGTT GCGAAGGCATTGTGGCCCGAGGTGGTTCGTCCCGGGCGACGGCAAAGATTTCATCCGCGA AGAAGCCGTAGAGGACCTGATTGCAATTTTGCTTTCCGGCCCGGGGTCCTCCTTGTAAAA GCCAGGGACTTTAATGCTATTTCCTTTTCTGCTGAGTCCTTATATGCTCTTTGTACCGTA ACTGTATCAGATATTAACGGAGCGTCTAGGCCCTTCGCGGCCTTTACAGTTAAAAAAAAA AGAAAAAAAGAAAGACGACGGCGCTCGCTCGCCCATTTTCACTTGTCCTCGCGCTCGCGC GTACGCCTCGCTTTAGTTTCGTCTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGC CCCTTCTCCACCCCCACCCTAGCACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACC GAGCTCATTCCGAAGGTAGAACACCTCTGTTTTTTGCAACATACTGCAATGGGGGTACTG CTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGATAACAATGGGGGTTTCC TGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAG GAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCATATTGCTGCTGGTGGAG GGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGATTACAACAAGATGGTAG ATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACGGAATGTATCAAGCTCC TAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTTGTACCGGACACTTCCACAACCAT TTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTG ATATTAATAGTTACCTCAACATGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGG CATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAG CAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACA GGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAAT GCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGC TACTGAAGGTTACATAGAGGATATGGCTGACTGTTTTCTCTTGGTATTGCAAATTGTTTA TGGTCGCTCACTTGGTCTTTTATCATCAGGACTATGAGGGTGCAAGTGAACGGTTCTTGG ATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTATGA AGTCCTTG