Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G005710.39

ChromosomeExonStartStopDirection
chr4H11355329313553274-
chr4H21355433013554251-
chr4H31355458213554412-
chr4H41355570813555595-
chr4H51355606213555928-
chr4H61355627013556187-
chr4H71355783813557579-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g42350.1 +3 8e-76 237 136/272 (50%) protein|ankyrin, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g23634.1.p +3 1e-77 241 136/250 (54%) pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (864 bp)

>HORVU4Hr1G005710.39 864 150831_barley_pseudomolecules
ATTTTATGGGTTTCAGCTCTAGCCTACCCCAACTTGTTTGGGACTAAATGCTTTGTTGTT
GTTGTTGTATTGCCAGAAAACACCTCTCCTCTTTGTTATAAGTTCCATGTTTTCTCCCAG
GTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTG
CTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTT
TATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTG
CTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAA
TTTGTGACCCCTTGTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATT
GAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGG
TTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGA
GTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGC
AGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGG
GATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGC
CAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAA
GTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCAT
TACGGGAAGCTATGAAGTCCTTGA