- Transcript HORVU4Hr1G005710.34
- Transcript IDHORVU4Hr1G005710.34
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.34
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13553221 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556063 | 13555928 | - |
| chr4H | 6 | 13556193 | 13556188 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +2 | 2e-50 | 168 | 86/147 (59%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.2.p | +2 | 1e-49 | 165 | 83/135 (61%) | pacid=32774780 transcript=Bradi2g23634.2 locus=Bradi2g23634 ID=Bradi2g23634.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (580 bp)
>HORVU4Hr1G005710.34 580 150831_barley_pseudomolecules AGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTTGTACCGGACACTTCCACAACCATT TAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGA TATTAATAGTTACCTCAACATGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGC ATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGC AAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAG GAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATG CAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCT ACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGT GGACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAG CACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATC