- Transcript HORVU4Hr1G005710.3
- Transcript IDHORVU4Hr1G005710.3
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552719 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556062 | 13555928 | - |
| chr4H | 6 | 13556270 | 13556187 | - |
| chr4H | 7 | 13557718 | 13557579 | - |
| chr4H | 8 | 13559790 | 13559662 | - |
| chr4H | 9 | 13560835 | 13560650 | - |
| chr4H | 10 | 13561002 | 13560935 | - |
| chr4H | 11 | 13561135 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +3 | 4e-104 | 320 | 199/387 (51%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +3 | 7e-119 | 358 | 213/384 (55%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1737 bp)
>HORVU4Hr1G005710.3 1737 150831_barley_pseudomolecules AGCACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGAGTCC ACGACCCGATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAA AGTCGCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACT TGAGGGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGG GGAGCCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCG ACAAGGAAGGTAGAACACCTCTGTTTTTTGCAACATACTGCAATGGGGGTACTGCTGAGT ATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGATAACAATGGGGGTTTCCTGTTAC ATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTT ACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGT ATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTG TGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTA AGCTGTGGCATCCTGCAATTTGTGACCCCTTGTACCGGACACTTCCACAACCATTTAAAA AAAAACTTGTCGCATATTGAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGATATTA ATAGTTACCTCAACATGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAG AGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAAT TGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCC TTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAA AAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGA AGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACA CTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAGCACGA AAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACGGGTCAGG AGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTGTCTCATG GCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGTTGATGCTTGC AGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTACAGGCTCTTA TGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGCGTCCCCG AATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCTGGCTCTG TAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATATCTTGTGTAGG TTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCTAAGTTTTGGTAGC TGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGGCTCAATGGCAT