- Transcript HORVU4Hr1G005710.27
- Transcript IDHORVU4Hr1G005710.27
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.27
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552730 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13556062 | 13555595 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13559790 | 13559662 | - |
| chr4H | 8 | 13560835 | 13559901 | - |
| chr4H | 9 | 13561000 | 13560935 | - |
| chr4H | 10 | 13561193 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g29160.1 | +1 | 8e-60 | 212 | 149/385 (39%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.2.p | +1 | 2e-44 | 165 | 84/142 (59%) | pacid=32774780 transcript=Bradi2g23634.2 locus=Bradi2g23634 ID=Bradi2g23634.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2750 bp)
>HORVU4Hr1G005710.27 2750 150831_barley_pseudomolecules CTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAG CACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGTCCACGA CCCGATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAAAGTC GCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACTTGAG GGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGGGGAG CCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCGACAA GGAAGGTCCAACTATCTTCAAAACCCTAATCTTTCGGTGCAGGCTTCGTCGAATTGCATG GAGTGCCTATTTTACATGCTGGAATTTGTTGTTCGCTAGGGCTGCTTCATCTGTAGGTCA GGTCTCACGATATCCGACTGTTTTGTGCTTTCTCTGGGTTTGGCATAGAGGTGCATTATG AGAGCCAGCTTTTGCCATGGCTCCAGGCTCAGCGCAACACAGTCCGGCAACCATAAACAT AGCCTAAGATCATCTACGTCAGTATGAACCAATGTATCATAGGCACCAATATTTTTCTCA CCAAATAAAATCATGTTTTGTCATATCCTGTTGTGCTAACTCATGATCATGCAGCTTTAT ACGGAAAAAGTCGGCCTTTTTAAGGAAGAAATAAGTCGGTCTTCATTATGATACTGAATG TGAATACCCTACATAAGCACCGTTCATATAAATAATTAAATAGGCTACTCTTTGAGGGCA AATTAATGTTTATTTTAGGATAGTTTGGTTGTTTAGTTATTGCACACATGTATGCACCCC AGCTCTGAGGATGTATTTGATTCTTCTATTCGGGTAGTCGAATGTCTAATTTTCATGCGT CAGTTCCATTTAACCAATACTCTCTCGAGCATTATGAAAATCCTGCGTCATATCGTATCT AACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGCCATATCTAAATTCTATGCTCTCAGA GAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGGTAGAACACCTCTGTTTTTTGCAACA TACTGCAATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCC GATAACAATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTA GAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTT CATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCA GATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCA ACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTTGTAC CGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGGACTT CTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGGTACCGGTTTATGACAAT TTTGGTGGTAGTTTTTGTACTCACAATACTGAGCATGGATGTTAGGAGATACGTGTGCAG TTATAGAAATTTGAGAAAAGATATGCTTATGTTATCAGATCCTTTTTCCTTCATATATTT ACAGCAAAAAATCATGTAGTTCGTTCAGATATTATGTATCGCATGCATCATGCATAGAAT TGATTAATTGATGTTCTGTAGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCA TCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCA AAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGG AGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGC AGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTA CTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTG GACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAGC ACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACGGGT CAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTGTCT CATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGTTGATGC TTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTACAGGCT CTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGCGTC CCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCTGGC TCTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATATCTTGTG TAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCTAAGTTTTGG TAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGG