- Transcript HORVU4Hr1G005710.26
- Transcript IDHORVU4Hr1G005710.26
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.26
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553295 | 13552730 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13556062 | 13555595 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13559790 | 13559662 | - |
| chr4H | 8 | 13560835 | 13560650 | - |
| chr4H | 9 | 13561003 | 13560935 | - |
| chr4H | 10 | 13561163 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g29210.2 | +2 | 9e-49 | 173 | 106/198 (54%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23628.2.p | +2 | 9e-64 | 215 | 132/217 (61%) | pacid=32781285 transcript=Bradi2g23628.2 locus=Bradi2g23628 ID=Bradi2g23628.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1976 bp)
>HORVU4Hr1G005710.26 1976 150831_barley_pseudomolecules CTCCAAGCCCCTTCTCCACCCCCACCCTAGCACATCCTCCTCGACCGACGCCATGGTGTC GCCCTACCGAGCTCATTCCGAAGCAGTCCACGACCCGATGCTGGACATGGTCTTCCAGGC GGCATCCGACAACGACCTCCCCCGCTTAAAGTCGCTGGTCGTGATGCTGGACTTGGGCAG GGGCCGCCCCAAGAAGGTGATTGAGGACTTGAGGGTGGAAGACGATCCCAAGCTTGAAGG TTTCAGCGCGCTGCACATCGCGGCCAGGGGGAGCCTGGAGGTGTGCAGGTACCTCGTCGA GGAGCTGCTGGTGGATGTGGATCTGGTCGACAAGGAAGGTAGAACACCTCTGTTTTTTGC AACATACTGCAATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAA AGCCGATAACAATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAAT GGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACC ACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAG TGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAA CTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTT GTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGG ACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGGTACCGGTTTATGA CAATTTTGGTGGTAGTTTTTGTACTCACAATACTGAGCATGGATGTTAGGAGATACGTGT GCAGTTATAGAAATTTGAGAAAAGATATGCTTATGTTATCAGATCCTTTTTCCTTCATAT ATTTACAGCAAAAAATCATGTAGTTCGTTCAGATATTATGTATCGCATGCATCATGCATA GAATTGATTAATTGATGTTCTGTAGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCAC GGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGC AGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGA CAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCA ATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGAT GCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCC AGTGGACACTGCTATCGAGGATGCATTACGAGGGAAGCTATGAAGTCCTTGATGACGTCT CGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAA ACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGAC GTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGT TGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTA CAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGC AGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCT CCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATAT CTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCTAAG TTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGG