Transcript Data
Barley RTD
Links



Exon Structure of HORVU4Hr1G005710.17

ChromosomeExonStartStopDirection
chr4H11355329313552728-
chr4H21355433013554251-
chr4H31355458213554412-
chr4H41355570813555595-
chr4H51355628213556187-
chr4H61355759313557591-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g42350.1 +1 3e-51 176 99/210 (47%) protein|ankyrin, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g23634.1.p +1 5e-54 182 102/206 (50%) pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1030 bp)

>HORVU4Hr1G005710.17 1030 150831_barley_pseudomolecules
GACATATTTTTCCAGTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAA
GATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGGTTCAGAAGGAGCCTATGCTT
AAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAA
GATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCA
GTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTG
CTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAG
GGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGA
CTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCC
TTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGC
TGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGA
AAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTAT
GAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATC
TGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGC
CGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTT
GCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGA
AGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTG
ATGTAGGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGC
TGTGTGGGCT