- Transcript HORVU4Hr1G005710.15
- Transcript IDHORVU4Hr1G005710.15
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552726 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554584 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555597 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13560477 | 13559662 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g29210.1 | +3 | 4e-83 | 267 | 152/293 (52%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +3 | 1e-89 | 285 | 156/296 (53%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1973 bp)
>HORVU4Hr1G005710.15 1973 150831_barley_pseudomolecules ATGAGAGCCAGCTTTTGCCATGGCTCCAGGCTCAGCGCAACACAGTCCGGCAACCATAAA CATAGCCTAAGATCATCTACGTCAGTATGAACCAATGTATCATAGGCACCAATATTTTTC TCACCAAATAAAATCATGTTTTGTCATATCCTGTTGTGCTAACTCATGATCATGCAGCTT TATACGGAAAAAGTCGGCCTTTTTAAGGAAGAAATAAGTCGGTCTTCATTATGATACTGA ATGTGAATACCCTACATAAGCACCGTTCATATAAATAATTAAATAGGCTACTCTTTGAGG GCAAATTAATGTTTATTTTAGGATAGTTTGGTTGTTTAGTTATTGCACACATGTATGCAC CCCAGCTCTGAGGATGTATTTGATTCTTCTATTCGGGTAGTCGAATGTCTAATTTTCATG CGTCAGTTCCATTTAACCAATACTCTCTCGAGCATTATGAAAATCCTGCGTCATATCGTA TCTAACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGCCATATCTAAATTCTATGCTCTC AGAGAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGGTATTCTTTTGGAGATAAGACAT GCTTTGATACAAAAAAGATCTCATTTCTTGCTACGCTGAGAAGTGCTTTGATATAATTTC ATTTTTGTGTGTTTGTTTGCTTTATAGGTAGAACACCTCTGTTTTTTGCAACATACTGCA ATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGATAACA ATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTAGAGCTTT TGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCATATTG CTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGATTACA ACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACGGAAT GTATCAAGCTCCTAGTTAAGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCAT CAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAA AATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGA GCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCA GAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTAC TGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGG ACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAGCA CGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACGGGTC AGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTGTCTC ATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGTTGATGCT TGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTACAGGCTC TTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGCGTCC CCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCTGGCT CTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATATCTTGTGT AGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCTAAGTTTTGGT AGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGGCTCA