- Transcript HORVU4Hr1G005710.11
- Transcript IDHORVU4Hr1G005710.11
- Gene IDHORVU4Hr1G005710
Barley RTD
Exon Structure of HORVU4Hr1G005710.11
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552721 | - |
| chr4H | 2 | 13554330 | 13554250 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13556062 | 13555595 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13560835 | 13559662 | - |
| chr4H | 8 | 13561002 | 13560935 | - |
| chr4H | 9 | 13561135 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +1 | 4e-45 | 169 | 135/346 (39%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.2.p | +1 | 4e-42 | 158 | 79/125 (63%) | pacid=32774780 transcript=Bradi2g23634.2 locus=Bradi2g23634 ID=Bradi2g23634.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2814 bp)
>HORVU4Hr1G005710.11 2814 150831_barley_pseudomolecules AGCACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGAGTCC ACGACCCGATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAA AGTCGCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACT TGAGGGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGG GGAGCCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCG ACAAGGAAGGTCCAACTATCTTCAAAACCCTAATCTTTCGGTGCAGGCTTCGTCGAATTG CATGGAGTGCCTATTTTACATGCTGGAATTTGTTGTTCGCTAGGGCTGCTTCATCTGTAG GTCAGGTCTCACGATATCCGACTGTTTTGTGCTTTCTCTGGGTTTGGCATAGAGGTGCAT TATGAGAGCCAGCTTTTGCCATGGCTCCAGGCTCAGCGCAACACAGTCCGGCAACCATAA ACATAGCCTAAGATCATCTACGTCAGTATGAACCAATGTATCATAGGCACCAATATTTTT CTCACCAAATAAAATCATGTTTTGTCATATCCTGTTGTGCTAACTCATGATCATGCAGCT TTATACGGAAAAAGTCGGCCTTTTTAAGGAAGAAATAAGTCGGTCTTCATTATGATACTG AATGTGAATACCCTACATAAGCACCGTTCATATAAATAATTAAATAGGCTACTCTTTGAG GGCAAATTAATGTTTATTTTAGGATAGTTTGGTTGTTTAGTTATTGCACACATGTATGCA CCCCAGCTCTGAGGATGTATTTGATTCTTCTATTCGGGTAGTCGAATGTCTAATTTTCAT GCGTCAGTTCCATTTAACCAATACTCTCTCGAGCATTATGAAAATCCTGCGTCATATCGT ATCTAACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGCCATATCTAAATTCTATGCTCT CAGAGAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGGTATTCTTTTGGAGATAAGACA TGCTTTGATACAAAAAAGATCTCATTTCTTGCTACGCTGAGAAGTGCTTTGATATAATTT CATTTTTGTGTGTTTGTTTGCTTTATAGGTAGAACACCTCTGTTTTTTGCAACATACTGC AATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGATAAC AATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTAGAGCTT TTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCATATT GCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGATTAC AACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACGGAA TGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTTGTACCGGACA CTTCCACAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGGACTTCTGCAT ATGTGCCATGTTGATATTAATAGTTACCTCAACATGGTACCGGTTTATGACAATTTTGGT GGTAGTTTTTGTACTCACAATACTGAGCATGGATGTTAGGAGATACGTGTGCAGTTATAG AAATTTGAGAAAAGATATGCTTATGTTATCAGATCCTTTTTCCTTCATATATTTACAGCA AAAAATCATGTAGTTCGTTCAGATATTATGTATCGCATGCATCATGCATAGAATTGATTA ATTGATGTTCTGTAGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAG CTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTG TACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCCTT TGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAAAA ATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGAAG GACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACACT GCTATCGAGGATGCATTACGGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAGCACGAA AGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACGGGTCAGGA GTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTGTCTCATGG CCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGTTGATGCTTGCA GTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTACAGGCTCTTAT GTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGCGTCCCCGA ATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCTGGCTCTGT AGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATATCTTGTGTAGGT TTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCTAAGTTTTGGTAGCT GCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGGCTCAATGGC