- Transcript HORVU3Hr1G109960.21
- Transcript IDHORVU3Hr1G109960.21
- Gene IDHORVU3Hr1G109960
Barley RTD
Exon Structure of HORVU3Hr1G109960.21
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679779793 | + |
| chr3H | 2 | 679780077 | 679779949 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679783932 | 679783777 | + |
| chr3H | 8 | 679784080 | 679784000 | + |
| chr3H | 9 | 679784262 | 679784187 | + |
| chr3H | 10 | 679784610 | 679784345 | + |
| chr3H | 11 | 679785333 | 679785100 | + |
| chr3H | 12 | 679786251 | 679785445 | + |
| chr3H | 13 | 679786764 | 679786475 | + |
| chr3H | 14 | 679788057 | 679787992 | + |
| chr3H | 15 | 679788372 | 679788147 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 1536 | 862/1140 (76%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+1 | 0.0 | 809 | 507/1016 (50%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.4.p | +1 | 0.0 | 1763 | 939/1079 (87%) | pacid=32780758 transcript=Bradi2g58697.4 locus=Bradi2g58697 ID=Bradi2g58697.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3450 bp)
>HORVU3Hr1G109960.21 3450 150831_barley_pseudomolecules ATGGAGCTTAAATGCCTTTTCCAATACATAGTTAATCAACTGAAGAAAGGATTGGGCACT GAGCTTGTTGTACTTGAGGAACTCATTCAGCAAATGGCAAATGTACAGTACACTGAGAAC ATGACTGATGAACAGGTTGATGCTATGGCAGGAAGTGAAACATTGCGGCTTCAATCTTCG CTGTTTGGATCAACACGGAACTATAAGGTCCTGAATAAGTCTACTAACAAATTGCGGGAT TCTTTGCTTCCAAAAGATGAACCTAAACTGGCAATTCCTCTACTACTGCTCGTTGCCCAG CACAGATCCAAGATTATAATAAATGCAGATGCCACATATATCAAAATGGTTAGCGAGCAG TTTGATAGATGCCATGGAATACTACTTCAGTATGCCGAGTTTCTTTCAAGTGCTGTAACT TCATCAACCTATGTTCAGCTAGTACCTCCGCTGGAAGATCTCGTTTATAAATATCATATC GAGCCAGATATTGCTTTTCTTATATACCGCCCTGTAATGAGGCTTTTCAAAAGCGCTAAT GGTGGCGAGGCCTGTTGGCCTCTGGATGACAATGAAGAAGGGGAGTCTGTATCATGTGAT GAAATGATCTTGCATGGTGATTCATCTCAGAAGTTAATCATGTGGTCAGATCTTCTCAAC ACAATCCGAACAATTTTGCCAGCAAAAGCCTGGAACGGCCTTTCACCCGAATTGTATGCT ACTTTCTGGGGTTTAACACTGTATGATCTTCATTTTCCAAAAGATCGTTATGATGCAGAA ATCAAGAAGCTGCATGAAAATCTCAAACAACTTGAAGATAACTCAGATAACTCTAGCATT GCAATATCAAGACGTAAGAAGGATAAGGAGAGAATCCAAGATTTGCTGGACAAATTGAAC AATGAATCTGACAAGCATCAGCACCATGTTCTATCAGTGCTCCAAAGGCTAACCCGTGAA AAGGATAAATGGCTGAGTTCCAGTCCGGACGCACTGAAGATCAACATGGAATTTCTCCAG CGTTGCATATATCCACGCTGTGTTCTTAGCATGCAGGATGCTGTATATTGTGCTACATTC GTCCAGATGATGCATTCACTTGGGACTCCATTTTTCAACACGGTGAATCATATAGATGTT TTCATCTGCAAGACACTACAGCCAATGATCTGTTGTTGTACAGAATATGAGGCTGGCAGG CTGGGAAGGTTTCTTCATGAGACCCTGAAGATGGCCTACCATTGGAAGGTTCATTGGAAA TGGAGTGGAAGAATTACCAAGGTGCTTAATCAATGTATGGAGTCAAAGGAATACATGGAA ATCAGAAACGCCCTTATTGTGCTCACAAAGATAACTAGTATTTTTCCTGTGATGCGAAAA AGCGGTATCAACATCGAGAAAAGGGTTGCGAAGCTAAAGGGGGATGAGAGGGAAGATCTG AAAGTACTGGCCACTGGTGTAGCTGCTGCTCTGGCCGCTCGCAAGAGTTCATGGGTGTCT GAAGAAGAGTTTGGCATGGGTCACCTTGATCTGAAGCCAGTGCTTGCAAAACCTATTGCT GGAAATCAGTATGCAGATCCCTCGACAGCAAAAGATCATAGCGTTCGTGCAAAATCTGTA GAGGGTAGGCATGAAAGGTCAGAAAATGCAATGAAGCCTGATGCTCAACATAAGAAGAAT GCCTCAACTACAAACGGGTCTGATAGTCAAATACCATCTTCCTCTGCACAAGGAAAAGGT TCAGGGATTGCACGCGGTGCAGATGAACCTCCAAAACTTTTGTCCGATGATGGAGTTAAA GTCTTGAAGCCTACTGCAGAACCCGAGACAAGAGCGTCACAAAAGCGTGCTGTACACAAT GCTGCAAAGGTATCTAAGCATGATGTGGTGAAGGAAGATGCAAAACCTGGGAGATCTACT AGCAGGGGTCTTAATCAACAAGCCTCTGCTATTCCTGTTGACAAAGAAGTATTGTCTCAG GCAGCTGATGGTGTGCTGGATACTAATCCCACTAGTCCGTTGGTTGGCACAAATGGTAAT GTACATCCGGCACCACGAAAGCAAAAAAGATCTGTCGCCGTTGAAGAACAAGAGAGGACA GGTAAACGAAGGAAAGGAGAGATTGAAGGCCGGGATGGTGACTTGGCAGAACACCATACG GACAAAGAAAAAAAATTGGACCCGCGATCAGTAGATAAATTTCGTTCTGTGGATCATGAG AGAGGTGCTAGTGAGGAACAAAACCTAATTCGGACAGAGAAATTAAAAGAAAAGTTCGAT GAGAAATATGAAAGAGATCATAGAGAAAAAGCAGATCGGTCTGAGAGGCGCCGTGGAGAA GACGTGGTTGAGAGACCAACAGACAGATCATTGGAAAGGAGAGAGCGTTCTATTGAAAAG ATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGAAGACAGGAATAAGGAGGAGAGGAACAAA ATTAAGCATGAACCCATAGACCGAGCACATACTATTAAGAATGAACCCATAGACCGAGCA CATACTATTAAGCATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCATAGAC CGAGCACATACTTCTGACGAACGCTTCCGAGGGCAAAGCTTGCCACCACCTCCACCTCTT CCAACTAGTTTTGTACCCCAATCAGTCGCTGCTAACCGAAGAGATGAAGACATTGACCGA AGGGGGAGCAGCACCAGGCATACACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAAGG TGGCACTTGGAGGAGAATGCTCCGCTGTTGCAGGATGATGGGAAGCACAGGAGAGAGGAA GATCTCCGGGATAGAAAGCGTGAAGATAGGGATGTTTCATCAAGCAAGGTAGACGACAGG GATAGGGACAAAGGTAATACTGTGAAGGAAGATAGTGATCCTAATAGTGCATCCAAACGT CGAAAGATTAAAAGAGAACAGTCTGCTTTGGAGGCTGGGGAATACGCGCCTTCTGCTCCA CAGCCTCCGAGCGTTGGACCTGGTAACTCACAGTATGAAATACGAGAGAGAGAAAGAAAG GGTGCTATTTCACAGCATCGTCCATCACATGCTGATGACCTTCCTAGGATGCATGCCAAG GATTCAACAAGCAAGACAAGTCGTAGAGAGGCTGACCAAACGCATGATAGAGAATGGGAA GAGGAGAAGAGGCCAAGAACTGAAGCAAAGAGGAAGCATCGGAAGAGGAAAATGTATCTG GCATATTTGAACCATTCAGTGTGTATGCCTCACTCCATGGTTTTAGAAAGGTTTGCTGGG GCTGAAGAGGATCCACATGATCAATCCTTCAGCAGTACTCCGTCAATGCTATCCAGATGC AAATTATTGCAAACATTGTTGATTGCAAGGAACATATGGCCTGTTATACAGGTCGTTATA AACATTTTAGCAATGTGGAATGTAAGGAAG