- Transcript HORVU3Hr1G109960.17
- Transcript IDHORVU3Hr1G109960.17
- Gene IDHORVU3Hr1G109960
Barley RTD
Exon Structure of HORVU3Hr1G109960.17
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679660115 | 679659969 | + |
| chr3H | 2 | 679660340 | 679660215 | + |
| chr3H | 3 | 679661103 | 679661062 | + |
| chr3H | 4 | 679661262 | 679661203 | + |
| chr3H | 5 | 679661440 | 679661378 | + |
| chr3H | 6 | 679661746 | 679661666 | + |
| chr3H | 7 | 679662990 | 679662943 | + |
| chr3H | 8 | 679663157 | 679663089 | + |
| chr3H | 9 | 679663373 | 679663240 | + |
| chr3H | 10 | 679663948 | 679663873 | + |
| chr3H | 11 | 679664766 | 679664576 | + |
| chr3H | 12 | 679665014 | 679664934 | + |
| chr3H | 13 | 679665376 | 679665181 | + |
| chr3H | 14 | 679666673 | 679666485 | + |
| chr3H | 15 | 679666829 | 679666749 | + |
| chr3H | 16 | 679667043 | 679666924 | + |
| chr3H | 17 | 679668390 | 679668331 | + |
| chr3H | 18 | 679668657 | 679668530 | + |
| chr3H | 19 | 679779870 | 679779774 | + |
| chr3H | 20 | 679780077 | 679779949 | + |
| chr3H | 21 | 679780262 | 679780159 | + |
| chr3H | 22 | 679780772 | 679780595 | + |
| chr3H | 23 | 679781035 | 679780884 | + |
| chr3H | 24 | 679782367 | 679781761 | + |
| chr3H | 25 | 679782577 | 679782473 | + |
| chr3H | 26 | 679783932 | 679783777 | + |
| chr3H | 27 | 679784080 | 679784000 | + |
| chr3H | 28 | 679784262 | 679784187 | + |
| chr3H | 29 | 679784610 | 679784345 | + |
| chr3H | 30 | 679785867 | 679785100 | + |
| chr3H | 31 | 679786251 | 679785956 | + |
| chr3H | 32 | 679786764 | 679786475 | + |
| chr3H | 33 | 679787029 | 679787015 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 2500 | 1279/1621 (79%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+1 | 0.0 | 1720 | 922/1617 (57%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.1.p | +1 | 0.0 | 2860 | 1413/1567 (90%) | pacid=32780755 transcript=Bradi2g58697.1 locus=Bradi2g58697 ID=Bradi2g58697.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5212 bp)
>HORVU3Hr1G109960.17 5212 150831_barley_pseudomolecules ATGTCGCCGCCCCCGCTCCAGGCGCCGGACTACAGGTACGTCACCGAGGAGTGCCTCCGC GAATGGAAGGGCCAGTCCGCCGCCGCCTTCCGCCTCCCCGATCCGGTCCCCATGGCCCGC TTCCTCTACGAGCTCTGCTGGGCGATGGTGCGGGGGGACCTGCCGCCGCAAAAGTGCCGG GCGGCGCTGGATTCGGTGGTGTTCGTGGAGGAGGTGAGGCAGGAAGAGTCCGGCTCCGTG CTCGCCGACATCGTCGCTCACCTAGGGCAGGATATTACCATTTCTGGTGAATATCGCAGC CGTCTTGTCAAAATGACTAAGTCATTCGTGGAGTCTTCGTTGATTGCGCCTAGGCTTCTT CAAGAACGATGTGAAGAAGAGTTCCTATGGGAGGTTGAACAGAGTAAGTCAAAGGGCCAG GATTTGAAAGCCAAGGAGGTCAGAGTCAACACACGACTTCTGTATCAGCAAACGAAATTC AACCTTCTAAGAGAGGAAAGTGAGGGCTACGCCAAGTTGTCATTAATTGGACATTTTGAC CTGGACCCGAATCGTGTATTTGACATTGTGTTGGAATGTTTTGAACTCTATCCAGACAAC AGTATCTTTTATCAGCTTATACCTCTTTTTCCAAAGTCCCATGCTGCTCAAATTTTGGGG TTTAAATTTCAATATTATCAACAATTGGATGTAAACAGCCCTGTTCCATCTGGTCTTTTC CGAATAGCAGCCCTGTTGGTCAAATCTGGTCTTATTGACCTTGATAATCTCTACGCTCAT TTACTTCCAAATGACGATGAGGCGTTTGAGCATTTTGGCTCCTTTGTTTCAAGGAAAATT GATGAGGCTACTAAAATAGGCAAAATAAATCTTGCTGCTACTGGAAAGGACCTTATGGAC GACGAGAAGCAAGAAATAACGATCGATTTATACACAGCATTGGAGATGGAAAATGATATA ATTGATGAGCGAGCCCCTGAGATAGAAAAGAACCAGAAGCTTGGACTTCTTCTTGGTTTC CTCTCAGTCCATGATTGGGACCATGCGCAGCTACTATTTGAACGTCTTGTGCAGCTAAAT CCTGTCGAGCACGTTGAAATTTGTGATGCTTTATTTAGAATTATTGAGAAGACTATTTCG TCAGCGTACAGTACATATTGTGAAACACATCATAAAATCACCCGCAACATTGACACTAAA ATGATAGATGCATCATCTGTCTCTTCACATTTGGTTGATCTGCCGAAAGAGTTTTTCCAA ATGCTTGCTGCTTGTGGACCATACCTTCATCGTGACACACAATTATTCCAGAAGGTTTGC AGAGTGTTAAGGGTGTACCTTGCCTCGTCAAAAGAATCAGCCCGTACAGCGGGCATTATG TCTCCAGAATCTCGGGTCGAAGAAGCACTTGGGTCATGCTTGCTTCCTTCATTGCAGCTT ATACCTGCCAATCCTGCCGTTGATATGGAGATATGGGGAGTTCTTTCCCTTCTTCCTTAC GAGGTGCGCTATCGTTTGTATGGTGAGTGGGAGAAGGACACTGAACAAAACCCAATTGTC CTTGCTGCAAGGCAAACAGCAAAGCTGGACACGAGACGGCTCTTAAAACGTCTGGCCAAG GAAAATCTGAAGCAGCTTGGCCGCATGGTGGCTAAACTTGCTCATGCAAATCCAATGACT GTACTTCGGACAATTGTCCAACAGGTCGAAGCATACAGGGACATGATAAATCCAGTTGTG GATGCTTTTAAATACTTGACTCAGCTGGAATATGATATCTTGCAATATATTGTAATCGAA CGGTTGGCTCAAGGTGGTCGTGAGAAAGTAAAAGATGACGGCCTTAACCTGTCAGACTGG CTTCAGTGTCTAGCATCATTCTGGGGACACCTCTGCAAGAAGCATCTTTCCATGGAGCTT AAATGCCTTTTCCAATACATAGTTAATCAACTGAAGAAAGGATTGGGCACTGAGCTTGTT GTACTTGAGGAACTCATTCAGCAAATGGCAAATGTACAGTACACTGAGAACATGACTGAT GAACAGGTTGATGCTATGGCAGGAAGTGAAACATTGCGGCTTCAATCTTCGCTGTTTGGA TCAACACGGAACTATAAGGTCCTGAATAAGTCTACTAACAAATTGCGGGATTCTTTGCTT CCAAAAGATGAACCTAAACTGGCAATTCCTCTACTACTGCTCGTTGCCCAGCACAGATCC AAGATTATAATAAATGCAGATGCCACATATATCAAAATGGTTAGCGAGCAGTTTGATAGA TGCCATGGAATACTACTTCAGTATGCCGAGTTTCTTTCAAGTGCTGTAACTTCATCAACC TATGTTCAGCTAGTACCTCCGCTGGAAGATCTCGTTTATAAATATCATATCGAGCCAGAT ATTGCTTTTCTTATATACCGCCCTGTAATGAGGCTTTTCAAAAGCGCTAATGGTGGCGAG GCCTGTTGGCCTCTGGATGACAATGAAGAAGGGGAGTCTGTATCATGTGATGAAATGATC TTGCATGGTGATTCATCTCAGAAGTTAATCATGTGGTCAGATCTTCTCAACACAATCCGA ACAATTTTGCCAGCAAAAGCCTGGAACGGCCTTTCACCCGAATTGTATGCTACTTTCTGG GGTTTAACACTGTATGATCTTCATTTTCCAAAAGATCGTTATGATGCAGAAATCAAGAAG CTGCATGAAAATCTCAAACAACTTGAAGATAACTCAGATAACTCTAGCATTGCAATATCA AGACGTAAGAAGGATAAGGAGAGAATCCAAGATTTGCTGGACAAATTGAACAATGAATCT GACAAGCATCAGCACCATGTTCTATCAGTGCTCCAAAGGCTAACCCGTGAAAAGGATAAA TGGCTGAGTTCCAGTCCGGACGCACTGAAGATCAACATGGAATTTCTCCAGCGTTGCATA TATCCACGCTGTGTTCTTAGCATGCAGGATGCTGTATATTGTGCTACATTCGTCCAGATG ATGCATTCACTTGGGACTCCATTTTTCAACACGGTGAATCATATAGATGTTTTCATCTGC AAGACACTACAGCCAATGATCTGTTGTTGTACAGAATATGAGGCTGGCAGGCTGGGAAGG TTTCTTCATGAGACCCTGAAGATGGCCTACCATTGGAAGAGTGACGAATCAATATATGAG CGTGAATGTGGAAATAAGCCGGGATTCGCTGTATACTTCAGATTTCCAAATAGTCAACGC GTATCTTATCCTCAGTTTGTTAAAGTTCATTGGAAATGGAGTGGAAGAATTACCAAGGTG CTTAATCAATGTATGGAGTCAAAGGAATACATGGAAATCAGAAACGCCCTTATTGTGCTC ACAAAGATAACTAGTATTTTTCCTGTGATGCGAAAAAGCGGTATCAACATCGAGAAAAGG GTTGCGAAGCTAAAGGGGGATGAGAGGGAAGATCTGAAAGTACTGGCCACTGGTGTAGCT GCTGCTCTGGCCGCTCGCAAGAGTTCATGGGTGTCTGAAGAAGAGTTTGGCATGGGTCAC CTTGATCTGAAGCCAGTGCTTGCAAAACCTATTGCTGGAAATCAGTATGCAGATCCCTCG ACAGCAAAAGATCATAGCGTTCGTGCAAAATCTGTAGAGGGTAGGCATGAAAGGTCAGAA AATGCAATGAAGCCTGATGCTCAACATAAGAAGAATGCCTCAACTACAAACGGGTCTGAT AGTCAAATACCATCTTCCTCTGCACAAGGAAAAGGTTCAGGGATTGCACGCGGTGCAGAT GAACCTCCAAAACTTTTGTCCGATGATGGAGTTAAAGTCTTGAAGCCTACTGCAGAACCC GAGACAAGAGCGTCACAAAAGCGTGCTGTACACAATGCTGCAAAGGTATCTAAGCATGAT GTGGTGAAGGAAGATGCAAAACCTGGGAGATCTACTAGCAGGGGTCTTAATCAACAAGCC TCTGCTATTCCTGTTGACAAAGAAGTATTGTCTCAGGCAGCTGATGGTGTGCTGGATACT AATCCCACTAGTCCGTTGGTTGGCACAAATGGTAATGTACATCCGGCACCACGAAAGGTA TCAGCATCCTCCCAAAGATCAACAGTATTGGCTGCACATAGCGGTGGAACAGCTAATCCC ACCGGTGAAGGTGAATCTGCTGACTTGATTGATTCTACCGTGAAACAGCAAAAAAGATCT GTCGCCGTTGAAGAACAAGAGAGGACAGGTAAACGAAGGAAAGGAGAGATTGAAGGCCGG GATGGTGACTTGGCAGAACACCATACGGACAAAGAAAAAAAATTGGACCCGCGATCAGTA GATAAATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGTGAGGAACAAAACCTAATTCGG ACAGAGAAATTAAAAGAAAAGTTCGATGAGAAATATGAAAGAGATCATAGAGAAAAAGCA GATCGGTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAGAGACCAACAGACAGATCATTG GAAAGGAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGAA GACAGGAATAAGGAGGAGAGGAACAAAATTAAGCATGAACCCATAGACCGACCATAGACC GAGCACATACTTCTGACGAACGCTTCCGAGGGCAAAGCTTGCCACCACCTCCACCTCTTC CAACTAGTTTTGTACCCCAATCAGTCGCTGCTAACCGAAGAGATGAAGACATTGACCGAA GGGGGAGCAGCACCAGGCATACACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAAGGT GGCACTTGGAGGAGAATGCTCCGCTGTTGCAGGATGATGGGAAGCACAGGAGAGAGGAAG ATCTCCGGGATAGAAAGCGTGAAGATAGGGATGTTTCATCAAGCAAGGTAGACGACAGGG ATAGGGACAAAGGTAATACTGTGAAGGAAGATAGTGATCCTAATAGTGCATCCAAACGTC GAAAGATTAAAAGAGAACAGTCTGCTTTGGAGGCTGGGGAATACGCGCCTTCTGCTCCAC AGCCTCCGAGCGTTGGACCTGGTAACTCACAGTATGAAATACGAGAGAGAGAAAGAAAGG GTGCTATTTCACAGCATCGTCCATCACATGCTGATGACCTTCCTAGGATGCATGCCAAGG ATTCAACAAGCAAGACAAGTCGTAGAGAGGCTGACCATATGCTGCTGGCACG