Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G109960.13

ChromosomeExonStartStopDirection
chr3H1679660115679659969+
chr3H2679660340679660215+
chr3H3679661103679661062+
chr3H4679661262679661203+
chr3H5679661440679661378+
chr3H6679661746679661666+
chr3H7679662852679662778+
chr3H8679662990679662943+
chr3H9679663157679663089+
chr3H10679663373679663240+
chr3H11679663948679663873+
chr3H12679664766679664576+
chr3H13679665014679664934+
chr3H14679665376679665181+
chr3H15679666673679666485+
chr3H16679666829679666749+
chr3H17679667043679666924+
chr3H18679668390679668331+
chr3H19679668657679668530+
chr3H20679670148679669929+
chr3H21679671222679671121+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g68810.1 +1 0.0 1188 580/684 (85%) protein|expressed protein
TAIR PP10 AT1G24706 @ ARAPORT
AT1G24706.2 @ TAIR		 +1 0.0 857 430/683 (63%) Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823
BRACH PP3 Bradi2g58697.2.p +1 0.0 1290 620/667 (93%) pacid=32780756 transcript=Bradi2g58697.2 locus=Bradi2g58697 ID=Bradi2g58697.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2289 bp)

>HORVU3Hr1G109960.13 2289 150831_barley_pseudomolecules
ATGTCGCCGCCCCCGCTCCAGGCGCCGGACTACAGGTACGTCACCGAGGAGTGCCTCCGC
GAATGGAAGGGCCAGTCCGCCGCCGCCTTCCGCCTCCCCGATCCGGTCCCCATGGCCCGC
TTCCTCTACGAGCTCTGCTGGGCGATGGTGCGGGGGGACCTGCCGCCGCAAAAGTGCCGG
GCGGCGCTGGATTCGGTGGTGTTCGTGGAGGAGGTGAGGCAGGAAGAGTCCGGCTCCGTG
CTCGCCGACATCGTCGCTCACCTAGGGCAGGATATTACCATTTCTGGTGAATATCGCAGC
CGTCTTGTCAAAATGACTAAGTCATTCGTGGAGTCTTCGTTGATTGCGCCTAGGCTTCTT
CAAGAACGATGTGAAGAAGAGTTCCTATGGGAGGTTGAACAGAGTAAGTCAAAGGGCCAG
GATTTGAAAGCCAAGGAGGTCAGAGTCAACACACGACTTCTGTATCAGCAAACGAAATTC
AACCTTCTAAGAGAGGAAAGTGAGGGCTACGCCAAGTTGGTAACCCTACTTTGTCAAGTA
GGTTCAGATTTGGCTTGTCAAAATGCTTCTTCAGCAACTATCAGCATTGTAAAGTCATTA
ATTGGACATTTTGACCTGGACCCGAATCGTGTATTTGACATTGTGTTGGAATGTTTTGAA
CTCTATCCAGACAACAGTATCTTTTATCAGCTTATACCTCTTTTTCCAAAGTCCCATGCT
GCTCAAATTTTGGGGTTTAAATTTCAATATTATCAACAATTGGATGTAAACAGCCCTGTT
CCATCTGGTCTTTTCCGAATAGCAGCCCTGTTGGTCAAATCTGGTCTTATTGACCTTGAT
AATCTCTACGCTCATTTACTTCCAAATGACGATGAGGCGTTTGAGCATTTTGGCTCCTTT
GTTTCAAGGAAAATTGATGAGGCTACTAAAATAGGCAAAATAAATCTTGCTGCTACTGGA
AAGGACCTTATGGACGACGAGAAGCAAGAAATAACGATCGATTTATACACAGCATTGGAG
ATGGAAAATGATATAATTGATGAGCGAGCCCCTGAGATAGAAAAGAACCAGAAGCTTGGA
CTTCTTCTTGGTTTCCTCTCAGTCCATGATTGGGACCATGCGCAGCTACTATTTGAACGT
CTTGTGCAGCTAAATCCTGTCGAGCACGTTGAAATTTGTGATGCTTTATTTAGAATTATT
GAGAAGACTATTTCGTCAGCGTACAGTACATATTGTGAAACACATCATAAAATCACCCGC
AACATTGACACTAAAATGATAGATGCATCATCTGTCTCTTCACATTTGGTTGATCTGCCG
AAAGAGTTTTTCCAAATGCTTGCTGCTTGTGGACCATACCTTCATCGTGACACACAATTA
TTCCAGAAGGTTTGCAGAGTGTTAAGGGTGTACCTTGCCTCGTCAAAAGAATCAGCCCGT
ACAGCGGGCATTATGTCTCCAGAATCTCGGGTCGAAGAAGCACTTGGGTCATGCTTGCTT
CCTTCATTGCAGCTTATACCTGCCAATCCTGCCGTTGATATGGAGATATGGGGAGTTCTT
TCCCTTCTTCCTTACGAGGTGCGCTATCGTTTGTATGGTGAGTGGGAGAAGGACACTGAA
CAAAACCCAATTGTCCTTGCTGCAAGGCAAACAGCAAAGCTGGACACGAGACGGCTCTTA
AAACGTCTGGCCAAGGAAAATCTGAAGCAGCTTGGCCGCATGGTGGCTAAACTTGCTCAT
GCAAATCCAATGACTGTACTTCGGACAATTGTCCAACAGGTCGAAGCATACAGGGACATG
ATAAATCCAGTTGTGGATGCTTTTAAATACTTGACTCAGCTGGAATATGATATCTTGCAA
TATATTGTAATCGAACGGTTGGCTCAAGGTGGTCGTGAGAAAGTAAAAGATGACGGCCTT
AACCTGTCAGACTGGCTTCAGTGTCTAGCATCATTCTGGGGACACCTCTCGTCGCGCTTT
GCACTGTCCCTCCGGCCCTGGTGCAAGCTTGCATGCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGATGCAAGGGATGGCATGGCAATTCACCTCACGCAAACTCTACA
CATTAAGTGAAGCTCGATATGCAACGGGGCACTTGTGGGCTGTCCCACCAGCCCATTAAG
GGATGGTGTGTCTCCCCAAAGGCCTATGGGCTTCCCCGGGGTGGGTTGCCCTCCCCGGTG
AACTCCCGG