- Transcript HORVU3Hr1G109960.12
- Transcript IDHORVU3Hr1G109960.12
- Gene IDHORVU3Hr1G109960
Barley RTD
Exon Structure of HORVU3Hr1G109960.12
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679660115 | 679659969 | + |
| chr3H | 2 | 679660340 | 679660215 | + |
| chr3H | 3 | 679661103 | 679661062 | + |
| chr3H | 4 | 679661262 | 679661203 | + |
| chr3H | 5 | 679661440 | 679661378 | + |
| chr3H | 6 | 679661746 | 679661666 | + |
| chr3H | 7 | 679662852 | 679662778 | + |
| chr3H | 8 | 679662990 | 679662943 | + |
| chr3H | 9 | 679663157 | 679663089 | + |
| chr3H | 10 | 679663373 | 679663240 | + |
| chr3H | 11 | 679663948 | 679663873 | + |
| chr3H | 12 | 679664766 | 679664576 | + |
| chr3H | 13 | 679665014 | 679664934 | + |
| chr3H | 14 | 679665376 | 679665181 | + |
| chr3H | 15 | 679666673 | 679666485 | + |
| chr3H | 16 | 679666829 | 679666749 | + |
| chr3H | 17 | 679667154 | 679666924 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +1 | 0.0 | 1063 | 521/622 (84%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+1 | 0.0 | 740 | 374/611 (61%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.2.p | +1 | 0.0 | 1159 | 555/593 (94%) | pacid=32780756 transcript=Bradi2g58697.2 locus=Bradi2g58697 ID=Bradi2g58697.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1890 bp)
>HORVU3Hr1G109960.12 1890 150831_barley_pseudomolecules ATGTCGCCGCCCCCGCTCCAGGCGCCGGACTACAGGTACGTCACCGAGGAGTGCCTCCGC GAATGGAAGGGCCAGTCCGCCGCCGCCTTCCGCCTCCCCGATCCGGTCCCCATGGCCCGC TTCCTCTACGAGCTCTGCTGGGCGATGGTGCGGGGGGACCTGCCGCCGCAAAAGTGCCGG GCGGCGCTGGATTCGGTGGTGTTCGTGGAGGAGGTGAGGCAGGAAGAGTCCGGCTCCGTG CTCGCCGACATCGTCGCTCACCTAGGGCAGGATATTACCATTTCTGGTGAATATCGCAGC CGTCTTGTCAAAATGACTAAGTCATTCGTGGAGTCTTCGTTGATTGCGCCTAGGCTTCTT CAAGAACGATGTGAAGAAGAGTTCCTATGGGAGGTTGAACAGAGTAAGTCAAAGGGCCAG GATTTGAAAGCCAAGGAGGTCAGAGTCAACACACGACTTCTGTATCAGCAAACGAAATTC AACCTTCTAAGAGAGGAAAGTGAGGGCTACGCCAAGTTGGTAACCCTACTTTGTCAAGTA GGTTCAGATTTGGCTTGTCAAAATGCTTCTTCAGCAACTATCAGCATTGTAAAGTCATTA ATTGGACATTTTGACCTGGACCCGAATCGTGTATTTGACATTGTGTTGGAATGTTTTGAA CTCTATCCAGACAACAGTATCTTTTATCAGCTTATACCTCTTTTTCCAAAGTCCCATGCT GCTCAAATTTTGGGGTTTAAATTTCAATATTATCAACAATTGGATGTAAACAGCCCTGTT CCATCTGGTCTTTTCCGAATAGCAGCCCTGTTGGTCAAATCTGGTCTTATTGACCTTGAT AATCTCTACGCTCATTTACTTCCAAATGACGATGAGGCGTTTGAGCATTTTGGCTCCTTT GTTTCAAGGAAAATTGATGAGGCTACTAAAATAGGCAAAATAAATCTTGCTGCTACTGGA AAGGACCTTATGGACGACGAGAAGCAAGAAATAACGATCGATTTATACACAGCATTGGAG ATGGAAAATGATATAATTGATGAGCGAGCCCCTGAGATAGAAAAGAACCAGAAGCTTGGA CTTCTTCTTGGTTTCCTCTCAGTCCATGATTGGGACCATGCGCAGCTACTATTTGAACGT CTTGTGCAGCTAAATCCTGTCGAGCACGTTGAAATTTGTGATGCTTTATTTAGAATTATT GAGAAGACTATTTCGTCAGCGTACAGTACATATTGTGAAACACATCATAAAATCACCCGC AACATTGACACTAAAATGATAGATGCATCATCTGTCTCTTCACATTTGGTTGATCTGCCG AAAGAGTTTTTCCAAATGCTTGCTGCTTGTGGACCATACCTTCATCGTGACACACAATTA TTCCAGAAGGTTTGCAGAGTGTTAAGGGTGTACCTTGCCTCGTCAAAAGAATCAGCCCGT ACAGCGGGCATTATGTCTCCAGAATCTCGGGTCGAAGAAGCACTTGGGTCATGCTTGCTT CCTTCATTGCAGCTTATACCTGCCAATCCTGCCGTTGATATGGAGATATGGGGAGTTCTT TCCCTTCTTCCTTACGAGGTGCGCTATCGTTTGTATGGTGAGTGGGAGAAGGACACTGAA CAAAACCCAATTGTCCTTGCTGCAAGGCAAACAGCAAAGCTGGACACGAGACGGCTCTTA AAACGTCTGGCCAAGGAAAATCTGAAGCAGCTTGGCCGCATGGTGGCTAAACTTGCTCAT GCAAATCCAATGACTGTACTTCGGACAATTGTCCAACAGGTATTTGAACCAACAATGCAC ATACATTTCAAAGCAATAATAGATACTGCAGTCATATCTGAAACATGTGATATGCCTACT TCCATTTGGACTAGCGACTGGTACTTTTAG