- Transcript HORVU3Hr1G098530.5
- Transcript IDHORVU3Hr1G098530.5
- Gene IDHORVU3Hr1G098530
Barley RTD
Exon Structure of HORVU3Hr1G098530.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 659169943 | 659169802 | + |
| chr3H | 2 | 659171437 | 659171284 | + |
| chr3H | 3 | 659171629 | 659171536 | + |
| chr3H | 4 | 659172666 | 659172481 | + |
| chr3H | 5 | 659172823 | 659172776 | + |
| chr3H | 6 | 659173083 | 659172898 | + |
| chr3H | 7 | 659173257 | 659173171 | + |
| chr3H | 8 | 659173653 | 659173567 | + |
| chr3H | 9 | 659174471 | 659173736 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g70920.2 | +1 | 4e-137 | 401 | 207/301 (69%) | protein|cullin-1, putative, expressed |
| TAIR PP10 | AT4G02570 @ ARAPORT AT4G02570.4 @ TAIR |
+1 | 1e-35 | 142 | 105/319 (33%) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738 |
| BRACH PP3 | Bradi2g60057.3.p | +1 | 8e-161 | 461 | 236/304 (78%) | pacid=32775524 transcript=Bradi2g60057.3 locus=Bradi2g60057 ID=Bradi2g60057.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1720 bp)
>HORVU3Hr1G098530.5 1720 150831_barley_pseudomolecules AGCGCACCAAAGAACCAAACCCCTCGAAAAAGCTGAAACCCGTCCCCCAATCCGCCGTCG GCTGCCCTCCTCACCCCTACCGCGAACGGCAGGCGAGACGGCGGCGGCGGCGAGCACCGC CCGATCCTCTCCCCCCTCGTCGTTCACTGTAGGAGCAAAGCAGTAAAAATGAATGCGCAC CTCAGCTTTGAGGATGGCTGGAAGGTCCTGGAACAGGGCATTTTGACATGCTCAAAGATT TTGGAGGGTTCCACTGGTACAAGGCCTACTGTTGCTGAGTACATGAATTGCTATGACTGT GCTTATAGAATGGCTGTGCAGACAACCAGCTATTGTGAAGAGATGTACAATGGTTACAGG ACTACACTTGCAGAATCTGTTCGTGCACTGGTTTTACCCCATCTGATGCACAAGAGAGAT GACTACCTTTTGAGACAGCTTGAGAAAATGTGGTCGAACTATTGTATCATGGTTAAATGT ATATCTGGCTTCTTCAACTATTTGGACCGTTGCTTTGTTGAGCAAAGAAAGCTACCTTGT CTTGAAGACACTGCTGCCACTTCTTTTTTCTCGACAGTCTTTTCGTTCTTTAGCCATGAA GTATCAGAGGCTCTACTGACTTTGATTCGCCAAGAGCGTGATGGAAGCAATGTTGATATG GACATCTTGATGGTCATTATGCGTGGCATATGTCGCTCTGAAGTCAAATCCTTCATGAGA AATGCTGTTGTCCAAGATACATATGCTTACTACTCCAGGAAAAGTTCTGAATGGATAGTT CAGTACCCTCTACAAGATTACCTTGCCATGGTCCAGGATTGTATGGAGAAGGAAACCATG AGATTGATGAGCTATCTGCATATTCCTGAGGGAGATAGCACAGAACTCTGTTTGAAGGTT GTTAGTGCTCCATTGATGCAAATGTATGACAGCTATGCAAGAGAGAAACAGATTGGTGGC CAACTTTTGCTTCAAACATACAAGACTGTGGAGGATGATCTGCTGGCCAGATGCAATCGC TTGACAATTGACAGCGGCGTGGACAACAGTTCTGGCAGTTACATGGAGTAGAAAGGAAAT GCACTTCAGCTAACATTCATCTATAACCAAGATTACATACAGGAAGGGGTTCTAGAACAT GGCCTACATCTGGGGGAATTTTTTGTGCGGCTGCTCGGTTTTTGGTACCGTGGATTTTGT TGGCAAGGTTCGCCTAGATTAAACGCTGTACTGAATGCGAAGGGGATACCTCTTAAGTGC TGCCTCCTACCCCATTATGGTCAACAGCATCTGAAATGTACAGGATGGCTGGTCAATTTA TGCCAATGGCAGTTTATTTTGATCGTTGTCTAGCGAACATTAGGCCGGTCAGCACCTAGC ACTCTTAGTGGCTGGACATGGAGTATGTGGTCATGACACCAGAATGATCGGTGCATTGCC TGTGTGCCTTTTGCTTGCGAGCTTCTGATGCTGTCTATGGTCTAAGCTTATCTATGACTT GATGTTACTTTCCTGTGTTTGTGTGCTTGCCTAAATTGCTAAACTGTAGGTTGGATGTGT TTTCGCTTATTTCATGTCAAGTTTGCTGTTATGGTTGCAGTTCTTTCCTTGGTGGGCCAT AATTGTTTGCAATTTTAGATTAGATTATAAACCCTGGTTCCATTATTAATGGGGCATGGA TCTTATACCTTGTTGGTCTGACTTTAAGCTATTCTTGCGG