Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u2440192.1++4679-400Containing




Transcripts from Gene HORVU3Hr1G098530

TranscriptLength(bp)Description
HORVU3Hr1G098530.11681gene=HORVU3Hr1G098530 CDS=302-772
HORVU3Hr1G098530.21465gene=HORVU3Hr1G098530 CDS=297-1076
HORVU3Hr1G098530.31845gene=HORVU3Hr1G098530 CDS=417-1196
HORVU3Hr1G098530.41847gene=HORVU3Hr1G098530 CDS=293-1198
HORVU3Hr1G098530.51720gene=HORVU3Hr1G098530 CDS=169-1071
HORVU3Hr1G098530.61127gene=HORVU3Hr1G098530 CDS=290-1120
HORVU3Hr1G098530.71151gene=HORVU3Hr1G098530 CDS=281-1150
HORVU3Hr1G098530.81522gene=HORVU3Hr1G098530 CDS=560-1243
HORVU3Hr1G098530.91287gene=HORVU3Hr1G098530 CDS=142-885
HORVU3Hr1G098530.101174gene=HORVU3Hr1G098530 CDS=264-734
HORVU3Hr1G098530.111015gene=HORVU3Hr1G098530 CDS=381-1013
HORVU3Hr1G098530.121742gene=HORVU3Hr1G098530 CDS=457-1359
HORVU3Hr1G098530.131688gene=HORVU3Hr1G098530 CDS=200-1102
HORVU3Hr1G098530.141481gene=HORVU3Hr1G098530 CDS=685-1098
HORVU3Hr1G098530.151375gene=HORVU3Hr1G098530 CDS=1-498
HORVU3Hr1G098530.161674gene=HORVU3Hr1G098530 CDS=367-1269
HORVU3Hr1G098530.171232gene=HORVU3Hr1G098530 CDS=317-1219



Exon Structure of HORVU3Hr1G098530


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g70920.2 +2 9e-135 396 207/302 (69%) protein|cullin-1, putative, expressed
TAIR PP10 AT4G02570 @ ARAPORT
AT4G02570.4 @ TAIR
+2 8e-36 143 109/321 (34%) Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738
BRACH PP3 Bradi2g60057.3.p +2 6e-159 458 236/305 (77%) pacid=32775524 transcript=Bradi2g60057.3 locus=Bradi2g60057 ID=Bradi2g60057.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons