- Transcript HORVU3Hr1G098530.13
- Transcript IDHORVU3Hr1G098530.13
- Gene IDHORVU3Hr1G098530
Barley RTD
Exon Structure of HORVU3Hr1G098530.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 659169943 | 659169895 | + |
| chr3H | 2 | 659171169 | 659171046 | + |
| chr3H | 3 | 659171437 | 659171284 | + |
| chr3H | 4 | 659171629 | 659171536 | + |
| chr3H | 5 | 659172666 | 659172481 | + |
| chr3H | 6 | 659172823 | 659172776 | + |
| chr3H | 7 | 659173083 | 659172898 | + |
| chr3H | 8 | 659173257 | 659173171 | + |
| chr3H | 9 | 659173653 | 659173567 | + |
| chr3H | 10 | 659174408 | 659173736 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g70920.2 | +2 | 4e-137 | 400 | 207/301 (69%) | protein|cullin-1, putative, expressed |
| TAIR PP10 | AT4G02570 @ ARAPORT AT4G02570.4 @ TAIR |
+2 | 1e-35 | 142 | 107/320 (33%) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738 |
| BRACH PP3 | Bradi2g60057.3.p | +2 | 1e-161 | 463 | 236/304 (78%) | pacid=32775524 transcript=Bradi2g60057.3 locus=Bradi2g60057 ID=Bradi2g60057.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1688 bp)
>HORVU3Hr1G098530.13 1688 150831_barley_pseudomolecules CGAGACGGCGGCGGCGGCGAGCACCGCCCGATCCTCTCCCCCCTCGTCGAGGTTGCGGCC TGGTTTCCTAAATGGGTGCATGAAGGTTTCTGGAACATTTGTGTACTTGTGAAATTAGGG CTATCGTTTGTAGGGTATTGTGGGCCTTTGTTGAGTTTGTGTATCCAACTAAGTTCACTG TAGGAGCAAAGCAGTAAAAATGAATGCGCACCTCAGCTTTGAGGATGGCTGGAAGGTCCT GGAACAGGGCATTTTGACATGCTCAAAGATTTTGGAGGGTTCCACTGGTACAAGGCCTAC TGTTGCTGAGTACATGAATTGCTATGACTGTGCTTATAGAATGGCTGTGCAGACAACCAG CTATTGTGAAGAGATGTACAATGGTTACAGGACTACACTTGCAGAATCTGTTCGTGCACT GGTTTTACCCCATCTGATGCACAAGAGAGATGACTACCTTTTGAGACAGCTTGAGAAAAT GTGGTCGAACTATTGTATCATGGTTAAATGTATATCTGGCTTCTTCAACTATTTGGACCG TTGCTTTGTTGAGCAAAGAAAGCTACCTTGTCTTGAAGACACTGCTGCCACTTCTTTTTT CTCGACAGTCTTTTCGTTCTTTAGCCATGAAGTATCAGAGGCTCTACTGACTTTGATTCG CCAAGAGCGTGATGGAAGCAATGTTGATATGGACATCTTGATGGTCATTATGCGTGGCAT ATGTCGCTCTGAAGTCAAATCCTTCATGAGAAATGCTGTTGTCCAAGATACATATGCTTA CTACTCCAGGAAAAGTTCTGAATGGATAGTTCAGTACCCTCTACAAGATTACCTTGCCAT GGTCCAGGATTGTATGGAGAAGGAAACCATGAGATTGATGAGCTATCTGCATATTCCTGA GGGAGATAGCACAGAACTCTGTTTGAAGGTTGTTAGTGCTCCATTGATGCAAATGTATGA CAGCTATGCAAGAGAGAAACAGATTGGTGGCCAACTTTTGCTTCAAACATACAAGACTGT GGAGGATGATCTGCTGGCCAGATGCAATCGCTTGACAATTGACAGCGGCGTGGACAACAG TTCTGGCAGTTACATGGAGTAGAAAGGAAATGCACTTCAGCTAACATTCATCTATAACCA AGATTACATACAGGAAGGGGTTCTAGAACATGGCCTACATCTGGGGGAATTTTTTGTGCG GCTGCTCGGTTTTTGGTACCGTGGATTTTGTTGGCAAGGTTCGCCTAGATTAAACGCTGT ACTGAATGCGAAGGGGATACCTCTTAAGTGCTGCCTCCTACCCCATTATGGTCAACAGCA TCTGAAATGTACAGGATGGCTGGTCAATTTATGCCAATGGCAGTTTATTTTGATCGTTGT CTAGCGAACATTAGGCCGGTCAGCACCTAGCACTCTTAGTGGCTGGACATGGAGTATGTG GTCATGACACCAGAATGATCGGTGCATTGCCTGTGTGCCTTTTGCTTGCGAGCTTCTGAT GCTGTCTATGGTCTAAGCTTATCTATGACTTGATGTTACTTTCCTGTGTTTGTGTGCTTG CCTAAATTGCTAAACTGTAGGTTGGATGTGTTTTCGCTTATTTCATGTCAAGTTTGCTGT TATGGTTGCAGTTCTTTCCTTGGTGGGCCATAATTGTTTGCAATTTTAGATTAGATTATA AACCCTGG