- Transcript HORVU3Hr1G061690.9
- Transcript IDHORVU3Hr1G061690.9
- Gene IDHORVU3Hr1G061690
Exon Structure of HORVU3Hr1G061690.9
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 469770817 | 469768381 | + |
chr3H | 2 | 469771496 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g48190.1 | +3 | 1e-34 | 110 | 74/109 (68%) | protein|drought induced 19 protein, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g46240.1.p | +3 | 2e-42 | 138 | 93/110 (85%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2461 bp)
>HORVU3Hr1G061690.9 2461 150831_barley_pseudomolecules ACCGCCGGCCGGGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCCTACCACCATTCC GACCCCGACGCCACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACCGACCGGTACTAC GCGACTCTGCTCTGCTACCCTGCACGAAAAGGCCCCGATTTCTCACCCATTTCCTCTCCT CCCCTCATAAGAAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCCTCCTCCGTCAAC CGAAAAATCCATCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGCAACACGGCCAAC CGCAGCGCGAATCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCGCCCGTCGTTGGT CTCTCGCTGTCGGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCTAGGTGGTGTAGC TGAGGAGGTGAGGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAAGAGGAGTTCCGG AAGAGGAATCCATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCCTCGCCGCCGCCA AGCGCTTCTACGCCGCGCAGCTCGGCCACATCGACGGTGCGTGCGCCCTTCTCGTCTCAC CTTGCCTCTTCGCCCTCCCCCCCTTCACTGGATTTACTTACTTAGCTTCATGTTACTGAT TTCATGTTGGACTGGATGCAGATATGGCGGGGATGGGGATGGGGATGGGGATGGAGGAGG TGGACATGGACATGGAGGACGACGGGGAGATGGACATGGAGATGGAGATGCAGCTGGAGG AGGCAAGATGGCCGGAGGTCGCCTGCCCCTACTGCTACGAGGACTACGACCTCGGCTCCC TCTGCGTCCACCTCGAGGAGGACCACCCCTACGAGCCACACCCCGCGGTCAGTCAATCGC CACCGTGCCCGACCCTCATAGTTTCATCTTTGATGTGATGCACACAGCTCGTCTCATGAT CCTTCTCCGATTAGAGCTGTACAAAATGCTCTGGCTTGAGGGTTGACCCAGCGGATTAAC TCAGGATGTTAGCTCCTTTTACCTATTTTGATTGATTGATCGCAAGCTCGCTATGTTTTT ACCCAAATCTCCTATGCTCTACTGATGAATGAGTGCTAACATGACCCAAGATGTAGGGTC ACGTATTCATCTGTCCATTGTCAGTACGAAAGGTTGTATCTTGACACAGAAATCAAGAGG CTCACTCGCTTGCGTCAGATTGTAATTTAGCTAGCCTAAGGTTTCGGGTCAATTGCTAAC TTCCATGGTCTGAAATTTCTTGTGTTCTCTACTTGAACTTGAAGGTCTACTCTTAGATAC AGGGTCGATATCTGAACTTGAACTTGAAGGTCTACTCTTAGATACTGGAACTTGAACTTG TCATTGTCAAGGCGACCCCCTTGGTATTTGCTTGTCATTGTAGTACTTGAGCTATGCTCA GTGGGCATACAAGTATTCCCAAATATCAGGAGTTAAGACACAAGAGTAGTAATCCACCTA TGGCGTGCCTGGTAGCTACTTGTGCTAGGGGAAAAGGAATCTAGAAATGACATGTCTGAA GTCTGAACATTTGACAATTCATGACAGCACTTTCTACCTGCTAGGATGCACAATGCGATT TATTTTGTCTGGAGAGATTAAAAATGAGATGATGGCTTCAGCTGCTATATTTGATCCATC GCGTTCAAGTGGGTGCAGTGCGTACTCAAGAAGCTACCAAAGTATTGTACATATCACAAG GATACTGTTACCTGAAACTCACGTTCCAGAGATTATCCATTTCCAAATAAATATCCCAGA GATTAACTGCAAACTTCCTGGCAGCTAAAATAACTACTTATGTTAAATTTTGCATATTAT CTTGTTTTTGTCGTACAGTCAGACTGTTCATACCATACGTATTGTTTTTTTTAGTATCTT CTCCTAATTGTTTTTCCATTGTTATTTCAGCCTTGCCCCATCTGCTCTGAAAAGATTACA AGAGATATGCTAAATCATATCACCATGCATCACGGTTACTTGTTCAAGGTCTCTCTCTCC TTCTCTTGTACATGAATATGCTAACCACTCATGGATAACTTGGCTGAAAAACAGTTTTCC TGTCAAGTCAGTAAGGTTTCTGATGCCTTTTTTATTCTTGGCATCTACAGAATGGCAGCC GGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCACTTTCTTTACTGAGCCGAGATCTAC GTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTCATAGTCATAGGTCAAGGAACACCA CCACCACCACTACAAATATTTATGCTGATCCGCTGCTTTCATCGTTTGGCCTGGGCTTTG CAACATCAGATGCCGAGGAGCCATCAAAATCATCAGTTCCGGTTCTTGATGATACTTCAC TTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAGTATCGACTCGTCCCTCACAAGCG A