- Gene HORVU3Hr1G061690
- Gene IDHORVU3Hr1G061690
- Location chr3H: 469768135 - 469772099
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u21412 | 83.6 | + | + | 3965 | -781 | Containing |
Transcripts from Gene HORVU3Hr1G061690
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G061690.1 | 1837 | gene=HORVU3Hr1G061690 CDS=747-1505 |
| HORVU3Hr1G061690.2 | 2900 | gene=HORVU3Hr1G061690 CDS=2128-2568 |
| HORVU3Hr1G061690.3 | 1750 | gene=HORVU3Hr1G061690 CDS=747-1418 |
| HORVU3Hr1G061690.4 | 1418 | gene=HORVU3Hr1G061690 CDS=913-1416 |
| HORVU3Hr1G061690.5 | 1505 | gene=HORVU3Hr1G061690 CDS=913-1503 |
| HORVU3Hr1G061690.6 | 1627 | gene=HORVU3Hr1G061690 CDS=913-1221 |
| HORVU3Hr1G061690.7 | 2795 | gene=HORVU3Hr1G061690 CDS=546-878 |
| HORVU3Hr1G061690.8 | 1208 | gene=HORVU3Hr1G061690 CDS=465-1136 |
| HORVU3Hr1G061690.9 | 2461 | gene=HORVU3Hr1G061690 CDS=684-938 |
| HORVU3Hr1G061690.10 | 1678 | gene=HORVU3Hr1G061690 CDS=466-852 |
| HORVU3Hr1G061690.11 | 1370 | gene=HORVU3Hr1G061690 CDS=262-855 |
| HORVU3Hr1G061690.12 | 811 | gene=HORVU3Hr1G061690 CDS=3-398 |
| HORVU3Hr1G061690.13 | 696 | gene=HORVU3Hr1G061690 CDS=1-696 |
| HORVU3Hr1G061690.14 | 705 | gene=HORVU3Hr1G061690 CDS=1-705 |
| HORVU3Hr1G061690.15 | 1378 | gene=HORVU3Hr1G061690 CDS=1084-1377 |
Exon Structure of HORVU3Hr1G061690
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +1 | 9e-62 | 211 | 123/157 (78%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.1.p | +1 | 4e-74 | 244 | 145/160 (91%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons