- Transcript HORVU3Hr1G061690.5
- Transcript IDHORVU3Hr1G061690.5
- Gene IDHORVU3Hr1G061690
Barley RTD
Exon Structure of HORVU3Hr1G061690.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 469769267 | 469768152 | + |
| chr3H | 2 | 469770408 | 469770331 | + |
| chr3H | 3 | 469770817 | 469770531 | + |
| chr3H | 4 | 469771496 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +1 | 8e-72 | 229 | 125/164 (76%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.1.p | +1 | 5e-89 | 273 | 153/169 (91%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1505 bp)
>HORVU3Hr1G061690.5 1505 150831_barley_pseudomolecules CTTCGCCAGCCCCCGGCCGCGTTCACCAGAAAAAAATACTAAAAAACAAACCCTCCCCCG CGGCTCCACCCTCCGCAACCAACCACGCAACGCGACACCTCTCCCTCCCCCTTCATCTCT TTTTACCCCGTGACGAACGAGCGAGCCCACCAGAACCCACCACCGCGACGCGGTTTCCCT CCCTCCCTCCCGCAGTTAACGTCGCGCACTCACCGCGGCCCAACCCACCACCGCCGGCCG GGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCCTACCACCATTCCGACCCCGACGC CACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACCGACCGGTACTACGCGACTCTGCT CTGCTACCCTGCACGAAAAGGCCCCGATTTCTCACCCATTTCCTCTCCTCCCCTCATAAG AAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCCTCCTCCGTCAACCGAAAAATCCA TCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGCAACACGGCCAACCGCAGCGCGAA TCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCGCCCGTCGTTGGTCTCTCGCTGTC GGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCTAGGTGGTGTAGCTGAGGAGGTGA GGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAAGAGGAGTTCCGGAAGAGGAATCC ATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCCTCGCCGCCGCCAAGCGCTTCTAC GCCGCGCAGCTCGGCCACATCGACGGTGCGTGCGCCCTTCTCGTCTCACCTTGCCTCTTC GCCCTCCCCCCCTTCACTGGATTTACTTACTTAGCTTCATGTTACTGATTTCATGTTGGA CTGGATGCAGATATGGCGGGGATGGGGATGGGGATGGGGATGGAGGAGGTGGACATGGAC ATGGAGGACGACGGGGAGATGGACATGGAGATGGAGATGCAGCTGGAGGAGGCAAGATGG CCGGAGGTCGCCTGCCCCTACTGCTACGAGGACTACGACCTCGGCTCCCTCTGCGTCCAC CTCGAGGAGGACCACCCCTACGAGCCACACCCCGCGCCTTGCCCCATCTGCTCTGAAAAG ATTACAAGAGATATGCTAAATCATATCACCATGCATCACGGTTACTTGTTCAAGAATGGC AGCCGGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCACTTTCTTTACTGAGCCGAGAT CTACGTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTCATAGTCATAGGTCAAGGAAC ACCACCACCACCACTACAAATATTTATGCTGATCCGCTGCTTTCATCGTTTGGCCTGGGC TTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAGTTCCGGTTCTTGATGATACT TCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAGTATCGACTCGTCCCTCACA AGCGA