- Transcript HORVU3Hr1G061690.2
- Transcript IDHORVU3Hr1G061690.2
- Gene IDHORVU3Hr1G061690
Barley RTD
Exon Structure of HORVU3Hr1G061690.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 469768956 | 469768135 | + |
| chr3H | 2 | 469770408 | 469769062 | + |
| chr3H | 3 | 469770817 | 469770531 | + |
| chr3H | 4 | 469771916 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g48190.1 | +1 | 9e-62 | 211 | 123/157 (78%) | protein|drought induced 19 protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g46240.1.p | +1 | 4e-74 | 244 | 145/160 (91%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2900 bp)
>HORVU3Hr1G061690.2 2900 150831_barley_pseudomolecules GTCCCCATCCTCCCTCCCTTCGCCAGCCCCCGGCCGCGTTCACCAGAAAAAAATACTAAA AAACAAACCCTCCCCCGCGGCTCCACCCTCCGCAACCAACCACGCAACGCGACACCTCTC CCTCCCCCTTCATCTCTTTTTACCCCGTGACGAACGAGCGAGCCCACCAGAACCCACCAC CGCGACGCGGTTTCCCTCCCTCCCTCCCGCAGTTAACGTCGCGCACTCACCGCGGCCCAA CCCACCACCGCCGGCCGGGACCCGGACGCCCCGTGCGCCCACTCGTCATCGCCCTACCAC CATTCCGACCCCGACGCCACGGGGTAGCTGTCGGCCCGGCCGCTGCTGCTGACCGACCGG TACTACGCGACTCTGCTCTGCTACCCTGCACGAAAAGGCCCCGATTTCTCACCCATTTCC TCTCCTCCCCTCATAAGAAGAAGCTTCCTCGTCGCCTCCTCCTCCTCCTCCTCCTCCTCC GTCAACCGAAAAATCCATCCCCCTTTGAGGTCCTGGGTCACTGCCGCGCTAAGCAACACG GCCAACCGCAGCGCGAATCCCCCGAAGAAAAAGGCTTCGTTTCGGGAACCGCCGCCCGTC GTTGGTCTCTCGCTGTCGGAGTTCGGCGGCGGAGGGAGACGGAGCGACGGGTCTAGGTGG TGTAGCTGAGGAGGTGAGGACCGGCGGAAGCGGCTGGCTGAGTAAGCGGACCAAGAGGAG TTCCGGAAGAGGAATCCATTCCAATCATGGACTCGGAGCACTGGATCTCGCGCCTCGCCG CCGCCAAGCGCTTCTACGCCGCGCAGCTCGGCCACATCGACGATATGGCGGGGATGGGGA TGGGGATGGGGATGGAGGAGGTGGACATGGACATGGAGGACGACGGGGAGATGGACATGG AGATGGAGATGCAGCTGGAGGAGGCAAGATGGCCGGAGGTCGCCTGCCCCTACTGCTACG AGGACTACGACCTCGGCTCCCTCTGCGTCCACCTCGAGGAGGACCACCCCTACGAGCCAC ACCCCGCGGTCAGTCAATCGCCACCGTGCCCGACCCTCATAGTTTCATCTTTGATGTGAT GCACACAGCTCGTCTCATGATCCTTCTCCGATTAGAGCTGTACAAAATGCTCTGGCTTGA GGGTTGACCCAGCGGATTAACTCAGGATGTTAGCTCCTTTTACCTATTTTGATTGATTGA TCGCAAGCTCGCTATGTTTTTACCCAAATCTCCTATGCTCTACTGATGAATGAGTGCTAA CATGACCCAAGATGTAGGGTCACGTATTCATCTGTCCATTGTCAGTACGAAAGGTTGTAT CTTGACACAGAAATCAAGAGGCTCACTCGCTTGCGTCAGATTGTAATTTAGCTAGCCTAA GGTTTCGGGTCAATTGCTAACTTCCATGGTCTGAAATTTCTTGTGTTCTCTACTTGAACT TGAAGGTCTACTCTTAGATACAGGGTCGATATCTGAACTTGAACTTGAAGGTCTACTCTT AGATACTGGAACTTGAACTTGTCATTGTCAAGGCGACCCCCTTGGTATTTGCTTGTCATT GTAGTACTTGAGCTATGCTCAGTGGGCATACAAGTATTCCCAAATATCAGGAGTTAAGAC ACAAGAGTAGTAATCCACCTATGGCGTGCCTGGTAGCTACTTGTGCTAGGGGAAAAGGAA TCTAGAAATGACATGTCTGAAGTCTGAACATTTGACAATTCATGACAGCACTTTCTACCT GCTAGGATGCACAATGCGATTTATTTTGTCTGGAGAGATTAAAAATGAGATGATGGCTTC AGCTGCTATATTTGATCCATCGCGTTCAAGTGGGTGCAGTGCGTACTCAAGAAGCTACCA AAGTATTGTACATATCACAAGGATACTGTTACCTGAAACTCACGTTCCAGAGATTATCCA TTTCCAAATAAATATCCCAGAGATTAACTGCAAACTTCCTGGCAGCTAAAATAACTACTT ATGTTAAATTTTGCATATTATCTTGTTTTTGTCGTACAGTCAGACTGTTCATACCATACG TATTGTTTTTTTTAGTATCTTCTCCTAATTGTTTTTCCATTGTTATTTCAGCCTTGCCCC ATCTGCTCTGAAAAGATTACAAGAGATATGCTAAATCATATCACCATGCATCACGGTTAC TTGTTCAAGAATGGCAGCCGGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCACTTTCT TTACTGAGCCGAGATCTACGTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTCATAGT CATAGGTCAAGGAACACCACCACCACCACTACAAATATTTATGCTGATCCGCTGCTTTCA TCGTTTGGCCTGGGCTTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAGTTCCG GTTCTTGATGATACTTCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAGTATC GACTCGTCCCTCACAAGCGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTAGCAGGGCG ACCTTTGTGCAAGACCTGGTCCTCTCCACTTTATTTGGAGACGACTGAGTGCTCAAATGG CCCTACATTTTCCTTGTTAGATGGGTGCTTCCTTCACGCTGATTCAGATAGAACTGCAGC ACTCTGCCTTGAGTTGGTCAATCTTAACTTGGGCGACAGGGAGAAGTGCGTCTGGTGGTG CACCGTTTCTTCGTGTCAGTCAAGTGCGGATTTTATTTGGGCTTGACACATACACCTTAA TTTATGGTAGCTTGTCCCGTATTTCTCTTTGTCGCCGCATTATCGGACAGCGGTTCCTTG CCTTGTACCATCCTTTTCATCGTCAAGGGACAATCGTCTGTACCAACATCACAGGGCTGT TACATACGCTACACAATGCA