- Transcript HORVU3Hr1G061690.13
- Transcript IDHORVU3Hr1G061690.13
- Gene IDHORVU3Hr1G061690
Exon Structure of HORVU3Hr1G061690.13
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 469768956 | 469768881 | + |
chr3H | 2 | 469769072 | 469769062 | + |
chr3H | 3 | 469769267 | 469769136 | + |
chr3H | 4 | 469770408 | 469770331 | + |
chr3H | 5 | 469770817 | 469770531 | + |
chr3H | 6 | 469771584 | 469771473 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g48190.1 | +1 | 1e-111 | 321 | 184/248 (74%) | protein|drought induced 19 protein, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g46240.1.p | +1 | 1e-134 | 379 | 216/252 (86%) | pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (696 bp)
>HORVU3Hr1G061690.13 696 150831_barley_pseudomolecules ATGGACTCGGAGCACTGGATCTCGCGCCTCGCCGCCGCCAAGCGCTTCTACGCCGCGCAG CTCGGCCACATCGACGATATGGCGGGGATGGAGATGGAGATGCAGCTGGAGGAGGCAAGA TGGCCGGAGGTCGCCTGCCCCTACTGCTACGAGGACTACGACCTCGGCTCCCTCTGCGTC CACCTCGAGGAGGACCACCCCTACGAGCCACACCCCGCGCCTTGCCCCATCTGCTCTGAA AAGATTACAAGAGATATGCTAAATCATATCACCATGCATCACGGTTACTTGTTCAAGAAT GGCAGCCGGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCACTTTCTTTACTGAGCCGA GATCTACGTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTCATAGTCATAGGTCAAGG AACACCACCACCACCACTACAAATATTTATGCTGATCCGCTGCTTTCATCGTTTGGCCTG GGCTTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAGTTCCGGTTCTTGATGAT ACTTCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAGTATCGACTCGTCCCTC ACAAGCGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTAGCAGGGCGACCTTTGTGCAA GACCTGGTCCTCTCCACTTTATTTGGAGACGACTGA