Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G061690.12

ChromosomeExonStartStopDirection
chr3H1469768956469768840+
chr3H2469769099469769062+
chr3H3469769267469769130+
chr3H4469770817469770331+
chr3H5469771503469771473+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g48190.1 +3 6e-65 150 88/117 (75%) protein|drought induced 19 protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g46240.1.p +3 1e-79 171 99/118 (84%) pacid=32778880 transcript=Bradi2g46240.1 locus=Bradi2g46240 ID=Bradi2g46240.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (811 bp)

>HORVU3Hr1G061690.12 811 150831_barley_pseudomolecules
GCGGACCAAGAGGAGTTCCGGAAGAGGAATCCATTCCAATCATGGACTCGGAGCACTGGA
TCTCGCGCCTCGCCGCCGCCAAGCGCTTCTACGCCGCGCAGCTCGGCCACATCGACGATA
TGGCGGGGATGGGGATGGGGATGGGGATGGAGGAGATGGACATGGAGATGGAGATGCAGC
TGGAGGAGGCAAGATGGCCGGAGGTCGCCTGCCCCTACTGCTACGAGGACTACGACCTCG
GCTCCCTCTGCGTCCACCTCGAGGAGGACCACCCCTACGAGCCACACCCCGCGCCTTGCC
CCATCTGCTCTGAAAAGATTACAAGAGATATGCTAAATCATATCACCATGCATCACGGTT
ACTTGTTCAAGGTCTCTCTCTCCTTCTCTTGTACATGAATATGCTAACCACTCATGGATA
ACTTGGCTGAAAAACAGTTTTCCTGTCAAGTCAGTAAGGTTTCTGATGCCTTTTTTATTC
TTGGCATCTACAGAATGGCAGCCGGTTGCGCAGATTCGTTATTCCCGAGCGCCGTGCACT
TTCTTTACTGAGCCGAGATCTACGTGATGCTCATTTGCAGGCGCTTCTAGGAGGCGGTCA
TAGTCATAGGTCAAGGAACACCACCACCACCACTACAAATATTTATGCTGATCCGCTGCT
TTCATCGTTTGGCCTGGGCTTTGCAACATCAGATGCCGAGGAGCCATCAAAATCATCAGT
TCCGGTTCTTGATGATACTTCACTTCTTAAGGAGGCGCCTCCTCAACCTTGGGAATCAAG
TATCGACTCGTCCCTCACAAGCGAGGAAAGG