Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G039100.36

ChromosomeExonStartStopDirection
chr3H1230456521230456023+
chr3H2230456754230456614+
chr3H3230457777230457660+
chr3H4230458200230458030+
chr3H5230458901230458788+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3None-----




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1043 bp)

>HORVU3Hr1G039100.36 1043 150831_barley_pseudomolecules
CTGCTATTTCAGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAAC
GGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTG
ACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATC
TGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGA
TCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATT
TTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTG
AGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCT
ATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGT
TTGTGAGATGTTCTTCCATGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTC
TCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTG
TGCCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACG
TTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATC
ATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAA
AAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTAT
CAATTTATGGAAAAGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGA
CTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACA
TGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAG
GGCATGATCTTGGGACGTCCGGC