- Gene HORVU3Hr1G039100
- Gene IDHORVU3Hr1G039100
- Location chr3H: 230453682 - 230459496
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u20322 | 97.4 | + | + | 5815 | -157 | Containing |
Transcripts from Gene HORVU3Hr1G039100
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G039100.1 | 2459 | gene=HORVU3Hr1G039100 CDS=1150-1305 |
| HORVU3Hr1G039100.2 | 2123 | gene=HORVU3Hr1G039100 CDS=1026-1214 |
| HORVU3Hr1G039100.3 | 2733 | gene=HORVU3Hr1G039100 CDS=965-1153 |
| HORVU3Hr1G039100.4 | 2711 | gene=HORVU3Hr1G039100 CDS=891-1148 |
| HORVU3Hr1G039100.5 | 2219 | gene=HORVU3Hr1G039100 CDS=858-1115 |
| HORVU3Hr1G039100.6 | 2421 | gene=HORVU3Hr1G039100 CDS=858-1082 |
| HORVU3Hr1G039100.7 | 2418 | gene=HORVU3Hr1G039100 CDS=929-1084 |
| HORVU3Hr1G039100.8 | 2275 | gene=HORVU3Hr1G039100 CDS=855-1079 |
| HORVU3Hr1G039100.9 | 2661 | gene=HORVU3Hr1G039100 CDS=855-1112 |
| HORVU3Hr1G039100.10 | 2873 | gene=HORVU3Hr1G039100 CDS=929-1084 |
| HORVU3Hr1G039100.11 | 2014 | gene=HORVU3Hr1G039100 CDS=843-1100 |
| HORVU3Hr1G039100.12 | 2215 | gene=HORVU3Hr1G039100 CDS=843-1067 |
| HORVU3Hr1G039100.13 | 2327 | gene=HORVU3Hr1G039100 CDS=909-1064 |
| HORVU3Hr1G039100.14 | 2327 | gene=HORVU3Hr1G039100 CDS=835-1059 |
| HORVU3Hr1G039100.15 | 2368 | gene=HORVU3Hr1G039100 CDS=958-1182 |
| HORVU3Hr1G039100.16 | 2274 | gene=HORVU3Hr1G039100 CDS=908-1063 |
| HORVU3Hr1G039100.17 | 2582 | gene=HORVU3Hr1G039100 CDS=899-1087 |
| HORVU3Hr1G039100.18 | 1977 | gene=HORVU3Hr1G039100 CDS=897-1085 |
| HORVU3Hr1G039100.19 | 2179 | gene=HORVU3Hr1G039100 CDS=896-1051 |
| HORVU3Hr1G039100.20 | 2167 | gene=HORVU3Hr1G039100 CDS=896-1051 |
| HORVU3Hr1G039100.21 | 2371 | gene=HORVU3Hr1G039100 CDS=1007-1162 |
| HORVU3Hr1G039100.22 | 2376 | gene=HORVU3Hr1G039100 CDS=809-1033 |
| HORVU3Hr1G039100.23 | 2697 | gene=HORVU3Hr1G039100 CDS=928-1185 |
| HORVU3Hr1G039100.24 | 2522 | gene=HORVU3Hr1G039100 CDS=759-1016 |
| HORVU3Hr1G039100.25 | 2412 | gene=HORVU3Hr1G039100 CDS=635-823 |
| HORVU3Hr1G039100.26 | 1914 | gene=HORVU3Hr1G039100 CDS=530-754 |
| HORVU3Hr1G039100.27 | 1861 | gene=HORVU3Hr1G039100 CDS=515-739 |
| HORVU3Hr1G039100.28 | 2023 | gene=HORVU3Hr1G039100 CDS=609-833 |
| HORVU3Hr1G039100.29 | 2283 | gene=HORVU3Hr1G039100 CDS=602-790 |
| HORVU3Hr1G039100.30 | 2297 | gene=HORVU3Hr1G039100 CDS=508-765 |
| HORVU3Hr1G039100.31 | 1768 | gene=HORVU3Hr1G039100 CDS=487-642 |
| HORVU3Hr1G039100.32 | 1824 | gene=HORVU3Hr1G039100 CDS=467-622 |
| HORVU3Hr1G039100.33 | 2405 | gene=HORVU3Hr1G039100 CDS=1-354 |
| HORVU3Hr1G039100.34 | 1812 | gene=HORVU3Hr1G039100 CDS=410-565 |
| HORVU3Hr1G039100.35 | 1009 | gene=HORVU3Hr1G039100 CDS=3-326 |
| HORVU3Hr1G039100.36 | 1043 | gene=HORVU3Hr1G039100 CDS=1-291 |
Exon Structure of HORVU3Hr1G039100
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +3 | 3e-53 | 125 | 66/114 (58%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +3 | 3e-57 | 147 | 76/113 (67%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons