- Transcript HORVU3Hr1G039100.33
- Transcript IDHORVU3Hr1G039100.33
- Gene IDHORVU3Hr1G039100
Barley RTD
Exon Structure of HORVU3Hr1G039100.33
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454378 | 230454298 | + |
| chr3H | 2 | 230454815 | 230454481 | + |
| chr3H | 3 | 230455917 | 230455549 | + |
| chr3H | 4 | 230456521 | 230456035 | + |
| chr3H | 5 | 230456754 | 230456620 | + |
| chr3H | 6 | 230457777 | 230457660 | + |
| chr3H | 7 | 230458200 | 230458030 | + |
| chr3H | 8 | 230459496 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +1 | 2e-58 | 213 | 113/169 (67%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +1 | 2e-68 | 241 | 122/168 (73%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2405 bp)
>HORVU3Hr1G039100.33 2405 150831_barley_pseudomolecules CGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCG CCTCACCTCCATGAGGATAAAGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCAC ACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGC AGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTG GCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGAC GGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATG AAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAAAAAC CAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCT CGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAG AAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAATAGAATATATATTGG CCAATTGAGATGCTTTTTAATGCATATTGATGTTGAACTTGAAAATGCTTGTTGGCTAGC ACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTATGTTTCATCGCCAATT TTGCATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCGCCAAGGCGGAGGTGG CGTTGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAG CTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCT GTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTT GTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGC ACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTT TGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTC GGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGG CATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTGAG ATGTTCTTCCATATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCT CGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCG TTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAA CTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTT GTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTG AAAGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAA AGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGA TGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAA CAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGG GACGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAA TGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGA TAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAAC TTTCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTG CAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAAT GTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTT CTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACT GTCTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTG TGTATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAAGGGAAAAGTTTTTGGT CAGCCGGCGGATCTGTCTGTGTGCACATCAATCGCCTTTCTGACCATCGGATCTTTTATA ATCAG