- Transcript HORVU3Hr1G039100.31
- Transcript IDHORVU3Hr1G039100.31
- Gene IDHORVU3Hr1G039100
Barley RTD
Exon Structure of HORVU3Hr1G039100.31
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 230454412 | 230454277 | + |
| chr3H | 2 | 230454815 | 230454481 | + |
| chr3H | 3 | 230455917 | 230455544 | + |
| chr3H | 4 | 230456500 | 230456035 | + |
| chr3H | 5 | 230456754 | 230456614 | + |
| chr3H | 6 | 230457777 | 230457669 | + |
| chr3H | 7 | 230458200 | 230458030 | + |
| chr3H | 8 | 230458823 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +2 | 1e-55 | 147 | 83/152 (55%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +2 | 4e-63 | 166 | 92/156 (59%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1768 bp)
>HORVU3Hr1G039100.31 1768 150831_barley_pseudomolecules GTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAA GCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGCATCGGCATCATCTACG GAATTCCTTGTGAATTGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCGG CGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGAGGGGCTCGGAGAGCAGCAA TGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCGTTGGGTGGAACCTGGCGAG AGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGAACCTGTCGGCCGACGGGAT GCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCATCGTTTTGTAGATTATGAAGCT GTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATCTTCCTGGACAATGCAGAAAC CAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATGATTCAGCT CGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTGAGGAAGAG AAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATAATAGAATATATATTGG CCAATTGAGATGCTTTTTAATGCATATTGATGTTGAACTTGAAAATGCTTGTTGGCTAGC ACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTATGTTTCATCGCCAATT TTGCATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTGGCCGCCAAGGCGGAGGTGG CGTTGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAG CTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCT GTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTT GTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGC ACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTT TGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTC GGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGG CATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGTTCAGATT TTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCA GAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATCTT TCTATTTTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGG CCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTG GTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCGCACATCTATAG GTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTGGCATTCTAATA ATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCAT AAACAAGAGGAAAAAACAACACATGTAC