Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G037940.5

ChromosomeExonStartStopDirection
chr3H1216303548216303502+
chr3H2216303945216303843+
chr3H3216304786216304557+
chr3H4216306264216306038+
chr3H5216306463216306447+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g16210.1 +2 9e-52 164 81/88 (92%) protein|uncharacterized Cys-rich domain containing protein, putative, expressed
TAIR PP10 AT2G40935 @ ARAPORT
AT2G40935.1 @ TAIR		 +2 3e-37 110 49/80 (61%) Symbols: | PLAC8 family protein | chr2:17083199-17084216 FORWARD LENGTH=190
BRACH PP3 Bradi2g09980.1.p +2 7e-66 157 77/80 (96%) pacid=32778952 transcript=Bradi2g09980.1 locus=Bradi2g09980 ID=Bradi2g09980.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (624 bp)

>HORVU3Hr1G037940.5 624 150831_barley_pseudomolecules
CCGACAGTTCCGCCGCGAATCTCAAAGCGCTGCGGCGGTTTCTCAAGCTCGGGCATTCGG
CGGACAGAGCGTTCCGGAACTGGTGAGGCGAGGCCGCGGATAAGCACCAATTTGGTCGTC
GGCGCTTCAGGGGTCTTTACCGATTTATTGAGATGGTTGGAAAAGGAAGCTATGTTCCGC
CGCAGTATGTTCCGTTATATGGTGTAGATACTGAGGAGGATAGCGTTCCTGAGGTGGAGG
AGAACATTGCCACGCGCCAAAGATTAAGCAGGGATCCTACACAATGGTCTTCAGGCATCT
GTGCTTGTTTTGATGATCCACAGAGCTGTATGCTACTTTCTGACCCGTGACTCCTTGAAT
TACAGAAGGAAAGATAAAAGGTTGTATTGGTGCGACTTGCCCCTGCTTTCTTTTTGGAAA
AAATGCACAGTTCTTGGGATCTGGAACTCTCGCTGGATCATGCACCACCCATTGCATGCT
TTGGGGCCTTCTGACAAGTTTCTGCTGTCTGTGTACTGGGGGGCTTGTATTAGCAGTTCC
AGGGTCTGCTGTTGCTTGTTATGCTTGTGGATACCGCCAAGCACTAAGAACGAAGTACAA
CCTTCCGGAAGCACCATGCGGCGA