Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1987395.0++3480-185Containing




Transcripts from Gene HORVU3Hr1G037940

TranscriptLength(bp)Description
HORVU3Hr1G037940.11367gene=HORVU3Hr1G037940 CDS=526-1080
HORVU3Hr1G037940.21420gene=HORVU3Hr1G037940 CDS=849-1133
HORVU3Hr1G037940.31188gene=HORVU3Hr1G037940 CDS=347-901
HORVU3Hr1G037940.41028gene=HORVU3Hr1G037940 CDS=171-725
HORVU3Hr1G037940.5624gene=HORVU3Hr1G037940 CDS=153-350
HORVU3Hr1G037940.6745gene=HORVU3Hr1G037940 CDS=248-445
HORVU3Hr1G037940.71859gene=HORVU3Hr1G037940 CDS=388-585
HORVU3Hr1G037940.81110gene=HORVU3Hr1G037940 CDS=528-812
HORVU3Hr1G037940.9443gene=HORVU3Hr1G037940 CDS=159-443
HORVU3Hr1G037940.10733gene=HORVU3Hr1G037940 CDS=146-430



Exon Structure of HORVU3Hr1G037940


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3None-----




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons