- Transcript HORVU3Hr1G037940.3
- Transcript IDHORVU3Hr1G037940.3
- Gene IDHORVU3Hr1G037940
Barley RTD
Exon Structure of HORVU3Hr1G037940.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 216303663 | 216303423 | + |
| chr3H | 2 | 216303945 | 216303843 | + |
| chr3H | 3 | 216304733 | 216304557 | + |
| chr3H | 4 | 216306264 | 216306038 | + |
| chr3H | 5 | 216306886 | 216306447 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g16210.1 | +2 | 2e-74 | 229 | 111/123 (90%) | protein|uncharacterized Cys-rich domain containing protein, putative, expressed |
| TAIR PP10 | AT2G40935 @ ARAPORT AT2G40935.1 @ TAIR |
+2 | 4e-70 | 219 | 102/166 (61%) | Symbols: | PLAC8 family protein | chr2:17083199-17084216 FORWARD LENGTH=190 |
| BRACH PP3 | Bradi2g09980.1.p | +2 | 2e-111 | 324 | 165/183 (90%) | pacid=32778952 transcript=Bradi2g09980.1 locus=Bradi2g09980 ID=Bradi2g09980.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1188 bp)
>HORVU3Hr1G037940.3 1188 150831_barley_pseudomolecules CTGGGCCGTACTGTGCCAGCCCACTTGGCTAGGTTTGGCTGCATCGCCATGGTGGCTGAG GGAAAAACTTGGGCGAGCACCGACAGTTCCGCCGCGAATCTCAAAGCGCTGCGGCGGTTT CTCAAGGTGAGCTTCCTCGGAACGTGTTACGTGTTCTCCGGTTCTTCCCCGAGCTAAGCT CGACCTCGCCCTCCCGTCCATTCCTAACACGCACCGGATATCTCCTCCTGCCGAAGCGCA TCTCGGGCATTCGGCGGACAGAGCGTTCCGGAACTGGTGAGGCGAGGCCGCGGATAAGCA CCAATTTGGTCGTCGGCGCTTCAGGGGTCTTTACCGATTTATTGAGATGGTTGGAAAAGG AAGCTATGTTCCGCCGCAGTATGTTCCGTTATATGGTGTAGATACTGAGGAGGATAGCGT TCCTGAGGTGGAGGAGAACATTGCCACGCGCCAAAGATTAAGCAGGGATCCTACACAATG GTCTTCAGGCATCTGTGCTTGTTTTGATGATCCACAGAGCTGTTGTATTGGTGCGACTTG CCCCTGCTTTCTTTTTGGAAAAAATGCACAGTTCTTGGGATCTGGAACTCTCGCTGGATC ATGCACCACCCATTGCATGCTTTGGGGCCTTCTGACAAGTTTCTGCTGTCTGTGTACTGG GGGGCTTGTATTAGCAGTTCCAGGGTCTGCTGTTGCTTGTTATGCTTGTGGATACCGCCA AGCACTAAGAACGAAGTACAACCTTCCGGAAGCACCATGCGGCGATTTGACGACGCACTT ATTTTGCCATCTGTGTGCGATATGCCAAGAGTACAGGGAGATCCGCGAGAGATCAGACAG TAGCGCCTCTTCAGCTCCTGATGTTACTCCACCTCCTGTGCAGACAATGGATGACCTTTG ACTGAGTAGATGACGAGAACATATCCTGCCTGGCAAATCTTTGGTTGGCTTGACATGCCC TTGCCTGTAAGTATTTGTGTTACTGTGCACTGCTCCCACAGCTACGATGTCAGATTTTAT GCAGCTGGTGTAAAGATAACCTGTAAACTAATGGACAGCGCGAGAAAATGTAACCCTTTT GTTGCACGATTATAGCATGTAACATTTTTTCTTCATACATGTAGAAATGAAATGGAAACA AAGAGTGTTCTCCTGGACATGAGTTTCTACTTTGGGTGCATATGCACC