Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G031460.8

ChromosomeExonStartStopDirection
chr3H1156627098156627059-
chr3H2156627286156627225-
chr3H3156628029156627930-
chr3H4156628966156628723-
chr3H5156629882156629587-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g14180.1 +1 1e-71 179 111/172 (65%) protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G29080 @ ARAPORT
AT4G29080.1 @ TAIR		 +1 5e-46 117 88/191 (46%) Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
BRACH PP3 Bradi2g07770.1.p +1 1e-94 249 142/162 (88%) pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (742 bp)

>HORVU3Hr1G031460.8 742 150831_barley_pseudomolecules
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgCGCG
GACGACGACCTGAAAGGCACCGAGCTCCGCCTCGGACTTCCCGGCTGCGAGTCGCCGGAC
CGCCGCCCGGTCGCCGCCACCACCACACTGGAGCTTCTGCCCGCCAAGGGCGCCAAGCGA
GGGTTCTCGGACGAGGTCCTGCCGCCTGCGCCGTCTGCCGCCGGCGGGAAAGGCAAGGAG
ACGTCCGGGGATGAGAAGGACAAGAAGGTCGCCGCACCGCCGCAGCCTGCTGCCAAGGCT
CAGGTGGTGGGATGGCCACCAATCCGCAGCTACCGCAAGAACACGATGGCAACCACCACC
AACCAGCTGAAGAGCAGCAAGGAGGATTCTGACGCGAAGCAGGGGCAAGAGTTTCTGTAT
GTCAAAGTCAGCATGGATGGCGCGCCTTACCTGAGGAAGGTTGACCTCAAGACATACAAG
AACTATAAGGACCTGTCTCTGGGGCTAGAGAAAATGTTCATTGGCTTCAGCACCGGTGAG
GTAAAGATGGTGTATCTGAGAACAGAAAGGATGGTGAATACGTGCTGACCTACGAAGACA
AGGACGGAGACTGGATGCTGGTTGGTGACGTCCCATGGGAGATGTTCACCGAGTCTTGCC
GAAGGCTGAGGGTCATGAAAGGTTCAGATGCAGTTGGACTTGCTGTTTCCCAGGCTTGCT
TAACTATTTGAACTGCACTTGA