Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u1941795.1--411199472Partial-Overlap




Transcripts from Gene HORVU3Hr1G031460

TranscriptLength(bp)Description
HORVU3Hr1G031460.11189gene=HORVU3Hr1G031460 CDS=3-695
HORVU3Hr1G031460.21186gene=HORVU3Hr1G031460 CDS=3-692
HORVU3Hr1G031460.31117gene=HORVU3Hr1G031460 CDS=3-695
HORVU3Hr1G031460.41114gene=HORVU3Hr1G031460 CDS=3-692
HORVU3Hr1G031460.5532gene=HORVU3Hr1G031460 CDS=154-279
HORVU3Hr1G031460.6762gene=HORVU3Hr1G031460 CDS=3-509
HORVU3Hr1G031460.7686gene=HORVU3Hr1G031460 CDS=333-461
HORVU3Hr1G031460.8742gene=HORVU3Hr1G031460 CDS=1-588
HORVU3Hr1G031460.9691gene=HORVU3Hr1G031460 CDS=1-435
HORVU3Hr1G031460.10675gene=HORVU3Hr1G031460 CDS=1-615
HORVU3Hr1G031460.11502gene=HORVU3Hr1G031460 CDS=107-445
HORVU3Hr1G031460.12143gene=HORVU3Hr1G031460 CDS=1-141



Exon Structure of HORVU3Hr1G031460


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g14180.1 +3 2e-99 297 169/238 (71%) protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G29080 @ ARAPORT
AT4G29080.1 @ TAIR		 +3 1e-59 196 130/270 (48%) Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
BRACH PP3 Bradi2g07770.1.p +3 6e-131 376 207/228 (91%) pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons