Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G031460.7

ChromosomeExonStartStopDirection
chr3H1156626357156626092-
chr3H2156627286156627225-
chr3H3156628287156627930-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g14180.1 +3 6e-35 125 60/71 (85%) protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g07770.1.p +3 1e-38 134 67/71 (94%) pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (686 bp)

>HORVU3Hr1G031460.7 686 150831_barley_pseudomolecules
GTAAATATCACTCAATTATTCATAAGCCTTTGATAAACAACAATTTCCCTGAAATGTCTT
CATACCTATTTTGTGCTTCAAGGTCAGACACCAAACCTACTAATTTAAAAACGTAAATTG
CAGGAAGGTGTATATTTAGGGACATAAAATTTGTCAACATACCAGTGCTGTGTTAAGAAG
TTTAGTGTCAGGTGGCCCTTTCTCCGGCATTTTGTTTATTTGTCCTTACATGTGGCACTG
GTTCTAATTTTGTACCAGGTAAAGATGGTGTATCTGAGAACAGAAAGGATGGTGAATACG
TGCTGACCTACGAAGACAAGGACGGAGACTGGATGCTGGTTGGTGACGTCCCATGGGAGA
TGTTCACCGAGTCTTGCCGAAGGCTGAGGGTCATGAAAGGTTCAGATGCAGTTGGACTTG
CAGTTCCAAGGGCAGGGGATAAGTCCAAGAATAAGAACTAAAGCGGTTGCTGCCCACAGT
TTGAAGACGGGGTCGCACATACCGTCTGTACTACCGCATGGTTTTTCTATCCCGCAAGTA
AAATCACTCCGTTACTCTACTGTTGTAAGATTTGTGATGTCTCCTAGAGACTTATGCTTT
ATATTTTGTCGTGCCGAAGTTGTTGTACGCATGCTATTTCCATCCGTGTAAATGGTTGGT
AAGCAGTGCGAGAGCTACTGCTGTGA