Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G031460.6

ChromosomeExonStartStopDirection
chr3H1156626357156626064-
chr3H2156627286156627225-
chr3H3156628029156627930-
chr3H4156628966156628728-
chr3H5156629615156629587-
chr3H6156729478156729441-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os05g14180.1 +3 8e-86 257 126/143 (88%) protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT4G29080 @ ARAPORT
AT4G29080.1 @ TAIR		 +3 2e-54 177 90/161 (56%) Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305
BRACH PP3 Bradi2g07770.1.p +3 2e-93 275 135/143 (94%) pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (762 bp)

>HORVU3Hr1G031460.6 762 150831_barley_pseudomolecules
GGGGGGAGGGAGGCAGAGGGAAACGAGCAAGTGTGGTGGTCGCCGCACCGCCGCAGCCTG
CTGCCAAGGCTCAGGTGGTGGGATGGCCACCAATCCGCAGCTACCGCAAGAACACGATGG
CAACCACCACCAACCAGCTGAAGAGCAGCAAGGAGGATTCTGACGCGAAGCAGGGGCAAG
AGTTTCTGTATGTCAAAGTCAGCATGGATGGCGCGCCTTACCTGAGGAAGGTTGACCTCA
AGACATACAAGAACTATAAGGACCTGTCTCTGGGGCTAGAGAAAATGTTCATTGGCTTCA
GCACCGGTAAAGATGGTGTATCTGAGAACAGAAAGGATGGTGAATACGTGCTGACCTACG
AAGACAAGGACGGAGACTGGATGCTGGTTGGTGACGTCCCATGGGAGATGTTCACCGAGT
CTTGCCGAAGGCTGAGGGTCATGAAAGGTTCAGATGCAGTTGGACTTGCAGTTCCAAGGG
CAGGGGATAAGTCCAAGAATAAGAACTAAAGCGGTTGCTGCCCACAGTTTGAAGACGGGG
TCGCACATACCGTCTGTACTACCGCATGGTTTTTCTATCCCGCAAGTAAAATCACTCCGT
TACTCTACTGTTGTAAGATTTGTGATGTCTCCTAGAGACTTATGCTTTATATTTTGTCGT
GCCGAAGTTGTTGTACGCATGCTATTTCCATCCGTGTAAATGGTTGGTAAGCAGTGCGAG
AGCTACTGCTGTGATTTGATGACTTCTATGTATTTTGCCAGT