- Transcript HORVU3Hr1G031460.5
- Transcript IDHORVU3Hr1G031460.5
- Gene IDHORVU3Hr1G031460
Barley RTD
Exon Structure of HORVU3Hr1G031460.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 156626354 | 156626064 | - |
| chr3H | 2 | 156627286 | 156627225 | - |
| chr3H | 3 | 156628108 | 156627930 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g14180.1 | +1 | 8e-37 | 129 | 59/70 (84%) | protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g07770.1.p | +1 | 2e-40 | 137 | 66/70 (94%) | pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (532 bp)
>HORVU3Hr1G031460.5 532 150831_barley_pseudomolecules GTTTAGTGTCAGGTGGCCCTTTCTCCGGCATTTTGTTTATTTGTCCTTACATGTGGCACT GGTTCTAATTTTGTACCAGGTAAAGATGGTGTATCTGAGAACAGAAAGGATGGTGAATAC GTGCTGACCTACGAAGACAAGGACGGAGACTGGATGCTGGTTGGTGACGTCCCATGGGAG ATGTTCACCGAGTCTTGCCGAAGGCTGAGGGTCATGAAAGGTTCAGATGCAGTTGGACTT GTTCCAAGGGCAGGGGATAAGTCCAAGAATAAGAACTAAAGCGGTTGCTGCCCACAGTTT GAAGACGGGGTCGCACATACCGTCTGTACTACCGCATGGTTTTTCTATCCCGCAAGTAAA ATCACTCCGTTACTCTACTGTTGTAAGATTTGTGATGTCTCCTAGAGACTTATGCTTTAT ATTTTGTCGTGCCGAAGTTGTTGTACGCATGCTATTTCCATCCGTGTAAATGGTTGGTAA GCAGTGCGAGAGCTACTGCTGTGATTTGATGACTTCTATGTATTTTGCCAGT