- Transcript HORVU3Hr1G031460.4
- Transcript IDHORVU3Hr1G031460.4
- Gene IDHORVU3Hr1G031460
Barley RTD
Exon Structure of HORVU3Hr1G031460.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 156626354 | 156625895 | - |
| chr3H | 2 | 156627286 | 156627225 | - |
| chr3H | 3 | 156628029 | 156627930 | - |
| chr3H | 4 | 156628966 | 156628728 | - |
| chr3H | 5 | 156629839 | 156629587 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os05g14180.1 | +3 | 4e-101 | 300 | 168/237 (71%) | protein|OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed |
| TAIR PP10 | AT4G29080 @ ARAPORT AT4G29080.1 @ TAIR |
+3 | 5e-61 | 198 | 129/269 (48%) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305 |
| BRACH PP3 | Bradi2g07770.1.p | +3 | 2e-132 | 379 | 206/227 (91%) | pacid=32771633 transcript=Bradi2g07770.1 locus=Bradi2g07770 ID=Bradi2g07770.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1114 bp)
>HORVU3Hr1G031460.4 1114 150831_barley_pseudomolecules NNNNNNNNNNccgCGCGGACGACGACCTGAAAGGCACCGAGCTCCGCCTCGGACTTCCCG GCTGCGAGTCGCCGGACCGCCGCCCGGTCGCCGCCACCACCACACTGGAGCTTCTGCCCG CCAAGGGCGCCAAGCGAGGGTTCTCGGACGAGGTCCTGCCGCCTGCGCCGTCTGCCGCCG GCGGGAAAGGCAAGGAGACGTCCGGGGATGAGAAGGACAAGAAGGTCGCCGCACCGCCGC AGCCTGCTGCCAAGGCTCAGGTGGTGGGATGGCCACCAATCCGCAGCTACCGCAAGAACA CGATGGCAACCACCACCAACCAGCTGAAGAGCAGCAAGGAGGATTCTGACGCGAAGCAGG GGCAAGAGTTTCTGTATGTCAAAGTCAGCATGGATGGCGCGCCTTACCTGAGGAAGGTTG ACCTCAAGACATACAAGAACTATAAGGACCTGTCTCTGGGGCTAGAGAAAATGTTCATTG GCTTCAGCACCGGTAAAGATGGTGTATCTGAGAACAGAAAGGATGGTGAATACGTGCTGA CCTACGAAGACAAGGACGGAGACTGGATGCTGGTTGGTGACGTCCCATGGGAGATGTTCA CCGAGTCTTGCCGAAGGCTGAGGGTCATGAAAGGTTCAGATGCAGTTGGACTTGTTCCAA GGGCAGGGGATAAGTCCAAGAATAAGAACTAAAGCGGTTGCTGCCCACAGTTTGAAGACG GGGTCGCACATACCGTCTGTACTACCGCATGGTTTTTCTATCCCGCAAGTAAAATCACTC CGTTACTCTACTGTTGTAAGATTTGTGATGTCTCCTAGAGACTTATGCTTTATATTTTGT CGTGCCGAAGTTGTTGTACGCATGCTATTTCCATCCGTGTAAATGGTTGGTAAGCAGTGC GAGAGCTACTGCTGTGATTTGATGACTTCTATGTATTTTGCCAGTGTTGTCCTGAACCGG CCGTTCGTCGTAAATGTGAGGGTTGCAAGACAATTATTTACCTGATGAACTTTGCTTCCG TACACCCTCCTAGAAAAGTTTACAGATTTCGATGTAGGTTAGAAGTTACTGCACTTTAAT TATTAAATAGAAAAAAGGGCAACATAGTCTTTCG